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Genomic Science Program

Systems Biology for Energy and the Environment

Department of Energy Office of Science. Click to visit main DOE SC site.

Genomic Science Program

Science Focus Area (Completed Project): Argonne National Laboratory (ANL)

Environment Sensing and Response

The Environment Sensing and Response (ESR) Scientific Focus Area (SFA) at ANL seeks to identify the molecular basis of cellular transport and sensory pathways that mediate the response of terrestrial ecosystems to environmental nutrients. The mechanistic links between and within ecosystems comprised of plants, fungi, and soil bacteria involved in the production of biomass for fuel are currently very poorly defined. The effects of nutrient availability, closely linked to climate, on those mechanistic links, are also inadequately understood. The ESR SFA will address this knowledge gap by mapping transport and sensor proteins to specific environmental compounds to define their function and biological roles and establish a series of defined connections between the environment and the cell. This knowledge will facilitate the development of system-level models predictive of cellular response to changes in environmental conditions. In addition, the molecular function information derived from these studies will enable synthetic biology approaches that modulate the system response by manipulating components of transporter or proteins containing sensor domains. A key component of the proposal is the re-engineering of specific transport proteins or complexes to modify the system response to phosphorous, nitrogen, or carbon sources in a predictable manner. The increased knowledge of function, regulation, and system response will support the Genomic Sciences Program goal of achieving a genome-based, dynamic systems-level understanding of organism and community functions.

SFA Research Manager: Robin Graham1

SFA Research Coordinator: Frank Collart1

SFA Task Leaders: Philip D. Laible1, Peter Larsen1, Lisa M. Miller2, Leland Cseke3

Participating Institutions: 1Argonne National Laboratory, Argonne IL 60439; 2Brookhaven National Laboratory, Upton NY 11973; 3University of Alabama, Huntsville AL 35899

Collaborations: DOE Systems Biology KnowledgeBase (KBase); DOE Joint Genome Institute (JGI); DOE Environmental and Molecular Science Laboratory (EMSL)

Featuring

Genome Engineering for Materials Synthesis Report [06/19]


Biosystems Design to Enable Next-Generation Biofuels (Summary of Funded Projects) [12/17]


Biosystems Design Report [04/12]

News

  • New Funding Announcement: DE-FOA-0002217 – Computational Tool Development for Integrative Systems Biology Data Analysis Additional Information » [11/19]
  • New Funding Announcement: DE-FOA-0002173 – Early Career Research Program Additional Information » [11/19]
  • Now Available: Breaking the Bottleneck of Genomes: Understanding Gene Function Across Taxa report [9/19]
  • 2019 PI Meeting: Genomic Sciences Program Annual Principal Investigator Meeting February 24 - 27, 2019, [abstracts and more...]
  • DOE Announces $64 Million for Plant and Microbe Research: U.S. Department of Energy announced $64 million in funding for 25 university-led genomics research projects on plants and microbes for bioenergy and bioproducts. [8/21]
    Read More »
  • $13.5 Million for New Bioimaging Approaches for Bioenergy: The U.S. Department of Energy announced $13.5 million in funding for six projects to develop new approaches to microscopic imaging of plants and microbes. [8/21]
    Read More »
  • More News and Announcements »

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