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Systems Biology for Energy and the Environment

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Plant Feedstock Genomics for Bioenergy



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USDA and DOE Fund Seven New Projects in 2013 for Biomass Genomics Research

The U.S. Department of Energy's Office of Science, Office of Biological and Environmental Research, and the U.S. Department of Agriculture (USDA) National Institute of Food and Agriculture’s Agriculture and Food Research Initiative* have jointly selected seven projects for awards totaling $8.1 million for biobased-fuel research. These awards continue a commitment begun in 2006 to conduct fundamental research in biomass genomics that will establish a scientific foundation to facilitate and accelerate the use of woody plant tissue for bioenergy and biofuel.

2013 Awards

In 2013, DOE will provide $6.1 million in funding over 3 years, while USDA will award $2 million over 3 years.

Functional Manipulation of Root Endophyte Populations for Feedstock Improvement

  • Jeffrey Dangl, University of North Carolina, Chapel Hill $1,543,490
  • DOE-BER funded project

Goal: Utilize genomics, genetics, and physiology to understand how endophytic bacteria alter plant growth and productivity, ultimately to manipulate plant performance for feedstock production. A variety of plant functions and traits are co-dependent on the surrounding microbial community, especially those associated with the plant root system (rhizosphere). This project will investigate whether plant performance phenotype in association with microbial communities translates across plant species in a predictable manner.

Unraveling the Genetics of Two Key Biomass Traits that Differentiate Upland and Lowland Tetraploid Switchgrass Ecotypes, Colonization by Mycorrhizal Fungi, and Frost Tolerance

  • Katrien Devos, University of Georgia, Athens $1,314,235
  • DOE-BER funded project

Goal: Develop strategies for increased frost tolerance of lowland switchgrass through (1) identifying the genetic pathway(s) that provide frost tolerance in upland switchgrass and (2) studying the potential of beneficial fungi to minimize host cold stress. This project seeks to leverage the high biomass yield of southern-adapted lowland types and the frost tolerance of northern-adapted upland types to identify candidate genes that can be exploited to enhance biomass production of switchgrass under cold stress.

Genetic Control of Flowering in Switchgrass

  • Yiwei Jiang, Purdue University, West Lafayette, IN $850,076
  • DOE-BER funded project

Goal: Elucidate the genetic mechanisms and identify candidate genes controlling flowering time in switchgrass. Late-flowering genotypes yield more biomass because the growing season is extended; having a better understanding of the genes that control flowering time will help to develop a rational strategy for creating improved switchgrass lines. The knowledge generated will aid breeding programs in developing late-flowering varieties of switchgrass that fully utilize the growing season and achieve high biomass yield.

Pyramiding Genes and Alleles for Improving Energy Cane Biomass Yield

  • Ray Ming, University of Illinois, Urbana-Champaign $998,564
  • DOE-BER funded project

Goal: Accelerate energy cane breeding and maximize biomass yield by utilizing the extraordinary segregation of true F2 populations to select high biomass-yielding genotypes. Sugarcane cultivars are mostly derived from hybridization between domesticated and wild species followed by backcrossing to recover the high biomass yield and sugar content of the domestic parent while retaining stress tolerance from the wild. Because sugar content is not a limiting factor for energy cane, this project will introduce a new breeding paradigm for more efficient cultivar improvement.

Global Analysis of Epigenetic Regulation of Gene Expression in Response to Drought Stress in Sorghum

  • A. S. N. Reddy, Colorado State University, Fort Collins $1,385,763
  • DOE-BER funded project

Goal: Investigate the impact of drought stress on epigenetic modifications and alternative splicing in sorghum. Using recently developed high-throughput tools, this project will examine genome-wide changes in the chromatin landscape and patterns of alternative splicing in cultivars that are sensitive and tolerant to drought under normal conditions and in response to drought stress. Understanding how plants respond and adapt to drought stress at the molecular level will help in developing plants that can grow under water-limiting conditions.

Accelerated Development of Optimal Pine Feedstocks for Bioenergy and Renewable Chemicals Using Genome-Wide Selection

  • Matias Kirst, University of Florida, Gainesville $1,000,000
  • USDA-NIFA funded project

Goal: Hyper-accelerate pine breeding using genome-wide selection, generating cultivars of loblolly and slash pine tailored to produce high energy yields that are ready for deployment. Traditional genetic improvement of pines is logistically complex and expensive, and a single breeding cycle takes almost two decades to complete. Thus, the project will develop and apply new breeding strategies that accelerate development of cultivars suitable for bioenergy production.

Structural Polymorphisms as Causes of Heterosis in Populus

  • Steven Strauss, Oregon State University, Corvallis $1,000,000
  • USDA-NIFA funded project

Goal: Characterize the extent of structural polymorphisms (SPs) between and within species of Populus that are used to produce wood and bioenergy, and examine their relationship to growth, stress tolerance, and breeding efficiency. This project will study wild black cottonwoods and interspecies hybrids important in plantations in the Pacific Northwest United States and other parts of the world, with a focus on the extent to which assay of SPs could improve hybrid breeding compared to alternative approaches.

View Awards by Year

*formerly the Cooperative State Research, Education, and Extension Service (CSREES), National Research Initiative


Genomics-Enabled Plant Biology for Determination of Gene Function Summaries of Projects Awarded by Year

Plant Feedstock Genomics for Bioenergy [01/19]

Lignocellulosic Biomass for Advanced Biofuels and Bioproducts: Workshop Report [2/15]

Sustainable Bioenergy [05/14]

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