Genomic Science Program
U.S. Department of Energy | Office of Science | Biological and Environmental Research Program

Research Summaries: Genomic Science Annual PI Meeting, February 2022

Abstract Book provided by Oak Ridge Associated Universities (ORAU)


Lead PIAbstract Poster TitlePresenterPI OrganizationResearch Area
AdamsLinking Community Composition and Resource Utilizationde RaadLawrence Berkeley National LaboratoryEnvironmental Microbiology
ZhaoMulti-omic investigation of lipid accumulation mechanisms in R. toruloidesDeewanUniversity of Illinois - Urbana-ChampaignMicrobial Biosystems Design
ArkinKBase: A case study illustrating the derivation and testing of mechanistic connections between geochemistry and the microbiomeDehalLawrence Berkeley National LaboratoryEnvironmental Microbiology
SemrauStructural and redox requirements for dioxygen generation coupled to metal reduction by methanobactins: implications for greenhouse gas emissionsDershwitzUniversity of Michigan - Ann ArborEnvironmental Microbiology
GilbertDoes Predation by Protists Mediate the Effects of Temperature and Nutrient Additions on Microbial Food Webs?DeWittDuke UniversityEnvironmental Microbiology
TyoHigh-throughput Screening for Caboligase Activity in ThDP-dependent EnzymesDinhNorthwestern UniversityMetabolic Engineering
BaxterAdvanced Phenomic Approaches to Improving Water-Use Efficiency in Bioenergy GrassesDinnenyDonald Danforth Plant Science CenterPlant Biosystems Design
LeakeyAutomated high-throughput genome editing of TAG-related genes in plantsDongUniversity of Illinois - Urbana-ChampaignPlant Feedstock
DotyElucidation of the Roles of Diazotrophic Endophyte Communities in Promoting Productivity and Resilience of Populus through Systems Biology ApproachesDotyUniversity of WashingtonPlant-Microbe Interactions
DocktyczPlant-Microbe Interfaces: Temporal dynamics of the Populus microbiome across scalesDoveOak Ridge National LaboratoryMicrobiome
ArkinHow KBase Supports EducationDowLawrence Berkeley National LaboratoryComputational Biology
NorthenSpatio-temporal genome-scale metabolic modeling of the rhizosphere microbiomeDukovskiLawrence Berkeley National LaboratoryMicrobial Biosystems Design
MillerScalable Computational Tools For Inference Of Protein Annotation And Metabolic Models In Microbial CommunitiesEdirisingheOtherComputational Biology
EgbertCatabolism of Methyl-3-(4-hydroxyphenyl)propionate (MHPP), a Model Substrate for Metabolic Addiction with Unexpected Implications for p-Coumaric Acid Catabolism in Pseudomonas flourescensElmorePacific Northwest National LaboratoryMicrobial Biosystems Design
EmersonEvidence for Active, Dynamic Viral Communities in Wet Soils across HabitatsEmersonUniversity of California - DavisEnvironmental Microbiology
AdamsInvestigating Microbial Ecophysiology of Aerobic and Anaerobic Microbes Through the ENIGMA Environmental AtlasEnallsLawrence Berkeley National LaboratoryEnvironmental Microbiology
DonohueGenome-scale CRISPRi Enables Functional Annotation of the Zymomomas mobilis GenomeEnrightUniversity of Wisconsin - MadisonMicrobial Physiology
MartienssenBiological Design of Lemnaceae Aquatic Plants for Biodiesel ProductionErnstCold Spring Harbor Laboratory/HMMIPlant Genomic Research
CoatesThe Global Prevalence and Biogeochemical Impact of Ancient Phosphorus-Oxidizing BacteriaEwensUniversity of California, BerkeleyEnvironmental Microbiology
TuskanDynamic Control of Aromatic Catabolism, In Situ Efflux Pump Engineering, and High-Throughput Functional Genomics in P. putdia KT2440 Enabled by CRISPR-Cas9FensterOak Ridge National LaboratoryTechnology Development
AllisonLitter Microbial Trait-Based Strategies in Response to DroughtFinleyUniversity of California - IrvineEnvironmental Microbiology
WhitmanA mechanistic approach to parsing pyrophilous lifestyles of fungal and bacterial isolatesFischerUniversity of Wisconsin - MadisonEnvironmental Microbiology
EgbertSimplified Microbial Communities Provide Diverse Complementation Potential for Genome-reduced MicroorganismsFonseca-GarciaPacific Northwest National LaboratoryMicrobial Biosystems Design
FoxAdditions to the BAHD Acyltransferase ToolboxFoxUniversity of Wisconsin - MadisonPlant Genomic Research
DocktyczPlant-Microbe Interfaces: Plant mechanisms shaping poplar root microbiotaFracchiaOak Ridge National LaboratoryPlant-Microbe Interactions
GauthierOptimizing enzymes for plastic upcycling using machine learning design and high throughput experimentsFramDana-Farber Cancer Inst.Deconstruction
LeakeyCell-type specific analysis reveals the spatial and temporal transcriptome of the Sorghum bicolor stemFuUniversity of Illinois - Urbana-ChampaignPlant Feedstock
GillEnhancement of the Random Barcode Transposon Sequencing Applications within KBaseGal-OzUniversity of Colorado - BoulderTechnology Development
SkolnickGenome-scale structural prediction of protein sequences and complexes with deep learningGaoGeorgia Tech Research Corporation, AtlantaComputational Biology
KeaslingUnderstand the Nanoarchitecture of Native and Engineered Plant Cell Wall via Multi-dimensional Solid-state NMRGaoLawrence Berkeley National LaboratoryPlant Feedstock
KeaslingEngineering and optimization of lignin catabolic pathways in Rhodosporidium toruloidesGarciaLawrence Berkeley National LaboratoryDeconstruction
DonohueEconomic and Environmental Analysis of Bioenergy with Carbon Capture and Sequestration (BECCS) SystemsGeisslerUniversity of Wisconsin - MadisonSustainability
AdamsCharacterization of a Nitrate-Respiring, Multi-Metal-Resistant Bacillus Species Highly Abundant in Heavily Contaminated ORR FRC SubsurfaceGoffLawrence Berkeley National LaboratoryEnvironmental Microbiology
LeakeyImpact of Sugarcane Cultivation on C and H2O Fluxes in Southeastern United States following Conversion from Grazed PasturesGomez-CasanovasUniversity of Illinois - Urbana-ChampaignBiogeochemistry
EvelandPhytoOracle: Modular, Scalable Phenomic Data Processing PipelinesGonzalezDonald Danforth Plant Science CenterPlant Genomic Research
SedbrookRoot adaptive responses for improvement of abiotic stress tolerance in PennycressGriffithsIllinois State UniversityPlant Genomic Research
YeatesMetabolism in Microbial Communities and the Associated Biochemistry of Polymer DeconstructionGunsalusUniversity of California - Los AngelesEnvironmental Microbiology
OrphanTranscriptional regulation of lipid metabolism in Camelina sativaGuptaMichgan State UniversityPlant Biosystems Design
SchnellUnderstanding Syntrophies within Methane Oxidizing Microbial Consortia: integrating Genome Scale Metabolic Models and Reactive TransportGuptaCalifornia Institute of TechnologyEnvironmental Microbiology
TagaImpact of Corrinoids on Soil Community Assembly in a Grassland SoilHallbergUniversity of California - BerkeleyEnvironmental Microbiology
JiaoCharacterization of Toxins and Their Cognate Inactivators as Kill Switch Actuators in Plant-Beneficial Pseudomonas fluorescensHalvorsenLawrence Livermore National LaboratoryMicrobial Biosystems Design
EgbertSpatially-resolved Multi-omics Analyses Reveal Key Taxa Responding to Root Depth in the Sorghum RhizosphereHandakumburaPacific Northwest National LaboratoryPlant-Microbe Interactions
ChainDevelopment of a model root-associated microbial consortia to investigate the roles of bacterial-fungal-plant interactions in the heat- and drought-tolerant grass Bouteloua gracilis (blue grama)HansonLos Alamos National LaboratoryMicrobiome
ArkinKBase: Significant Improvements to the DOE Systems Biology Knowledgebase in 2021HenryLawrence Berkeley National LaboratoryComputational Biology
StuartMycorrhizal Fungi Mediate Plant and Bacterial Response to Water Limitation in a Marginal SoilHestrinLawrence Livermore National LaboratoryPlant-Microbe Interactions
HofmockelDistribution of soil microbial necromass accumulation controlled by microbe-mineral interactionsHofmockelPacific Northwest National LaboratoryBiogeochemistry
SolomonDeveloping anaerobic fungal tools for efficient upgrading of lignocellulsic feedstocksHookerUniversity of DelawareMicrobial Biosystems Design
GillGenome-Scale CRISPRi in the Rapidly Growing Cyanobacterium Synechococcus sp. PCC 7002HrenUniversity of Colorado - BoulderMicrobial Biosystems Design
LeakeyLeveraging Population Genomics Analysis of Issatchenkia orientalis for Engineering a Better Strain for the Production of Lignocellulosic-biomass-based BioproductsHsiehUniversity of Illinois - Urbana-ChampaignDeconstruction
JiaoLearning Protein Fitness Models from Evolutionary and Experimental DataHsuLawrence Livermore National LaboratoryComputational Biology
NiyogiMetabolite Excretion and Metabolic Flux Analysis in Chromochloris zofingiensis, an Emerging Model Green Alga for Sustainable Fuel ProductionHuUniversity of California - BerkeleyMicrobial Biosystems Design
Eloe-FadroshStandardized Workflows for Microbiome Omics Data AnalysisHuLawrence Berkeley National LaboratoryMicrobiome
ZenglerExperimental Approaches to Understand Rhizosphere Processes for Improved Bioenergy Crop ProductivityHuUniversity of California - San DiegoPlant-Microbe Interactions
MaedaDevelopment and usage of atomic mapping for estimation of nitrogen fluxes in plant metabolic networksHussUniversity of Wisconsin - MadisonPlant Genomic Research
KeaslingA media optimization pipeline for improving TRY with machine learningInchaLawrence Berkeley National LaboratoryComputational Biology
SedbrookTolerance to Heat Stress in Natural Variants and CRISPR Gene-Edited High Oleic Acid Lines of the Oilseed Plant Pennycress (Thlaspi arvense).JaikumarIllinois State UniversitySustainability
JarboeNovel Systems Approach for Rational Engineering of Robust Microbial Metabolic PathwaysJarboeIowa State UniversityMetabolic Engineering
JardineThe Scent of Senescence: Cell Wall Ester Modifications and Volatile Emission Signatures of Plant Responses to Abiotic StressJardineLawrence Berkeley National LaboratoryPlant Genomic Research
NiyogiMineral Nutrition and Energy Pathways Regulate Lipid Accumulation and PhotosynthesisJeffersUniversity of California - BerkeleyMicrobial Biosystems Design
WinklerN2O Formation and Organic Nitrogen Utilization in Wetland Microbial CommunitiesJohnstonUniversity of WashingtonEnvironmental Microbiology
DocktyczPlant-Microbe Interfaces: Network integration uncovers gene-targets involved in plant- microbial interactionsJonesOak Ridge National LaboratoryComputational Biology
LeakeyA New Bioenergy Model that Simulates the Impacts of Plant-Microbial Interactions, Soil Carbon Protection, and Mechanistic Tillage on Soil Carbon CyclingJuiceUniversity of Illinois - Urbana-ChampaignBiogeochemistry
ChainBacterial Communities in Association to Specific Tissues in Wild MorelsJunierLos Alamos National LaboratoryMicrobiome
TuskanRapid domestication of poplar using genomic selection and P. trichocarpa X P.deltoides hybridsKainerOak Ridge National LaboratoryPlant Feedstock
LongImproving Energycane by Metabolic Engineering for Hyperaccumulation of Lipids and RNAi Suppression of FloweringKannanUniversity of Illinois - Urbana-ChampaignPlant Biosystems Design
Pett-RidgeMicrobes Persist: Towards Quantitative Theory-Based Predictions of Soil Microbial Fitness, Interaction and Function in KBaseKaraozLawrence Livermore National LaboratoryComputational Biology
RheeSystematic Identification of Subcellular Location of Sorghum Metabolic EnzymesKariaCarnegie Institution for SciencePlant Genomic Research
AllenCRISPR interference (CRISPRi) for Dynamic Regulation of Gene Expression in DiatomsKassawJ. Craig Ventner InstituteMicrobial Biosystems Design
KirstTwo Shifts in Evolutionary Lability Explain Many Independent Origins of Nitrogen-Fixing Nodulation Symbiosis in A Single Clade of The Plant Tree of LifeKatesUniversity of FloridaPlant Biosystems Design
StephanopoulosImproving Bioprocess Robustness by Cellular Noise EngineeringKatsimpourasMassachusetts Institutes of TechnologyMetabolic Engineering
BaxterImprovement of Sorghum Transformation and Genome Editing for the Development of Stable Lines for the Analysis of Photosynthetic and Water Use EfficienciesKauschDonald Danforth Plant Science CenterPlant Biosystems Design
NorthenEvaluating Plant-Microbe Interactions, Persistence and Movement of Microbial Communities Across ScalesKhasanovaLawrence Berkeley National LaboratoryPlant-Microbe Interactions
StuartMicroscale Characterization Tools for Algal-Bacterial Interactions and Cell SinkingKimLawrence Livermore National LaboratoryMicrobiome
DonohueMultiple-approaches to engineer mixed-linkage glucan in sorghumKimUniversity of Wisconsin - MadisonPlant Feedstock
KirstSingle-cell discovery of nodulation regulators in Medicago and evaluation of the functional role of homologs in PopulusKirstUniversity of FloridaPlant Biosystems Design
KirstDynamic change in chromatin accessibility predicts regulators of nodulation in Medicago truncatulaKnaackUniversity of FloridaComputational Biology
LeakeyInvestigation of xylose metabolism in Rhodosporidium toruloides using a modular cloning kit (RT-EZ)KohUniversity of Illinois - Urbana-ChampaignMetabolic Engineering
MaedaComprehensive Characterization of Multi-Substrate Specificity of Aminotransferase Family EnzymesKoperUniversity of Wisconsin - MadisonPlant Genomic Research
DunbarMicrobially-Drive Carbon Flow Persists During Surface Litter DecompositionKroegerLos Alamos National LaboratoryEnvironmental Microbiology
TuskanDiscovery, characterization, and metabolic engineering of Rieske non-heme iron monooxygenases for guaiacol O-demethylationKuatsjahOak Ridge National LaboratoryLignin Valorization
DonohueBuilding a Molecular Understanding of Biomass DeconstructionKuchUniversity of Wisconsin - MadisonDeconstruction
HungateSynThetic BiolOgy Driven Approach to Repurpose PolyaMides (STORM)KucharzykBattelle Memorial InstMicrobial Biosystems Design
JarboeMutations for Improved Enzyme Functionality at High Temperatures and Low pHKumarIowa State UniversityComputational Biology
ZenglerMetabolic modeling of a rhizosphere microbial communityKumarUniversity of California - San DiegoPlant-Microbe Interactions
ChurchA rapid biosensor engineering platform by translatable fluorogenic amino acidsKuruHarvard UniversityTechnology Development
LuGermination and Seed Size Variability in CamelinaLachowiecMontana State UniversityPlant Genomic Research
TuskanEmploying rapid, accurate, high-precision phenotyping in poplar, switchgrass, and bacteriaLagergrenOak Ridge National LaboratoryComputational Biology
ZenglerReconstruction of a genome-scale community metabolic model of a microbial co-culture to enable next generation biochemical productionLastiri-PancardoUniversity of California - San DiegoMicrobial Biosystems Design
DocktyczPlant-Microbe Interfaces: A high-throughput bioassay to investigate bacterial-provided benefits to heat stressLeeOak Ridge National LaboratoryPlant-Microbe Interactions
GuarnieriIMAGINE BioSecurity: Biocontainment Efficacy of Toxin-Antitoxin Cassettes in Laboratory and Industrial S. CerevisiaeLiNational Renewable Energy LaboratoryMicrobial Biosystems Design
JewettRapid Prototyping for Development of A Novel Gas-to-1,3-Butanediol BioprocessLiewNorthwestern UniversityMetabolic Engineering
KeaslingMultifaceted Adaptive Laboratory Evolution Approaches for Improving Host PhenotypesLimLawrence Berkeley National LaboratoryMetabolic Engineering
LuUnderstanding Nitrogen Use Efficiency and Oilseed Traits in Camelina by High Resolution Genome Sequencing and Whole-genome ResequencingLimMontana State UniversitySustainability
LinDeveloping, Understanding, and Harnessing Modular Carbon/Nitrogen-Fixing Tripartite Microbial Consortia for Versatile Production of Biofuel and Platform ChemicalsLinUniversity of Michigan - Ann ArborMicrobial Biosystems Design
NorthenA rapid Brachypodium distachyon transformation method using leaf whorl explantsLinLawrence Berkeley National LaboratoryPlant Biosystems Design
JamannNovel quantitative trait loci for leaf blight resistance in sorghum aids in understanding ofLippsUniversity of Illinois - Urbana-ChampaignPlant Feedstock
HofmockelProfiling of the Microbiome Metabolic Response to Soil RewettingLiptonPacific Northwest National LaboratoryMicrobiome
AbrahamDeveloping detection and countermeasure tools for CRISPR-based genome engineering tools in plantsLiuOak Ridge National LaboratoryPlant Biosystems Design
BlabyCryo-EM Structure of a Zinc Uptake Transporter in the Closed StateLiuBrookhaven National LaboratoryPlant Genomic Research
ChainComparative Genomics of Intracellular Mollicutes-related Bacterial Endosymbionts of FungiLongleyLos Alamos National LaboratoryEnvironmental Microbiology
JuengerExploring Switchgrass Genetic Diversity with Multiple Reference GenomesLovellUniversity of Texas - AustinSustainability
AdamsENIGMA Long Read Sequencing and Assembly for Microbial Genomes: Current Capabilities and Future for Metagenomics and KBase Integration for AssemblyLuiLawrence Berkeley National LaboratoryComputational Biology
ChappleIdentification of novel tryptophan-derived metabolites and associated genes of Arabidopsis by integrating PODIUM and mGWASLuoPurdue UniversityPlant Genomic Research
SchoenigerPhage Factory: Creating a phage for any bacterial speciesMageeneySandia National LaboratoryMicrobial Biosystems Design
LongBridging the Gap between Academic and Commercial Biofuel Production: Pilot-scale Processing of Transgenic Energycane for Lipid and Sugar RecoveryMaitraUniversity of Illinois - Urbana-ChampaignPlant Biosystems Design
AntonopoulosGuiding Data-Driven Integrative Design of Secure Biological Systems with Artificial Intelligence TechniquesMannArgonne National LaboratoryMicrobial Biosystems Design
Pett-RidgeTrait-based modeling approach to carbon use efficiencyMarschmannLawrence Livermore National LaboratoryEnvironmental Microbiology
RanjanDesign and -omics exploration of synthetic communitiesMarshOak Ridge National LaboratoryComputational Biology
JewettDynamic Kinetic Models Capture Cell-Free Metabolism for Improved Metabolic EngineeringMartinNorthwestern UniversityComputational Biology
MarxConverting Methoxy Groups on Lignin-Derived Aromatics from a Toxic Hurdle to a Useful Resource: A Systems-Driven ApproachMarxUniversity of IdahoMetabolic Engineering
HofmockelCoordination of species roles during chitin decomposition in a model soil microbial consortiumMcClurePacific Northwest National LaboratoryMicrobiome
EgbertDiscovery of Bacterial Species and Molecular Mechanisms Driving Growth on the Plant Root Metabolite SorgoleoneMcClurePacific Northwest National LaboratoryMicrobial Biosystems Design
DonohueRole of the Phyllosphere microbiome in Sorghum ResilienceMechan LlontopUniversity of Wisconsin - MadisonMicrobiome
BoyleAgent-Based Modeling of Algae Reveals Impact of Self-Shading on MetabolismMetcalfColorado School of MinesComputational Biology
DocktyczPlant-Microbe Interfaces: Determining the rate and consequences of horizontal gene transfer in the rhizosphere by simulating lateral spread of salicylate catabolism genesMichenerOak Ridge National LaboratoryMicrobial Biosystems Design
Tullman-ErcekEmploying Bacterial Microcompartments To Create Privileged Redox Pools for Biofuel ProductionMillsNorthwestern UniversityMetabolic Engineering
BaxterLeveraging multi-omics data and pan-genomic sequence variation in Setaria viridis and Sorghum bicolor for candidate gene discovery and nomination for crop improvement.MocklerDonald Danforth Plant Science CenterPlant Biosystems Design
SolomonPlastic degradation and upcycling by the gut microbiome of yellow mealwormsMonteiroUniversity of DelawareMicrobial Biosystems Design
MoonEngineering novel microbes for upcycling waste plastic and solving climate crisisMoonWashington University, St. LouisMicrobial Biosystems Design
AbrahamIntroductions of plant growth promoting bacterial strains differentially modify growth and health of Populus biofeedstocksMooreOak Ridge National LaboratoryMicrobiome
ChainAdvanced Fluorescence Microscopy Techniques to Measure Bacterial:Fungal InteractionsMoralesLos Alamos National LaboratoryTechnology Development
MoranSpatial plasticity in plant-microbe interactions in response to applied nutrient heterogeneity in soilMoranPacific Northwest National LaboratoryPlant-Microbe Interactions
PeterEnhanced Resistance Pines for Improved Renewable Biofuel and Chemical ProductionMorganUniversity of FloridaPlant Feedstock
DocktyczPlant-Microbe Interfaces: Investigating how interactions and local environments in the rhizosphere influence microbial responses and behaviorMorrell-FalveyOak Ridge National LaboratoryPlant-Microbe Interactions
StuartA novel algicidal bacterium threatens diatom productivity and incorporates algal-derived carbon and nitrogenMorrisLawrence Livermore National LaboratoryMicrobiome
NiyogiSynthetic Biology in Oleaginous Green AlgaeMoseleyUniversity of California - BerkeleyPlant Biosystems Design
DocktyczPlant-Microbe Interfaces: Modulation of microbial community dynamics by contrasting regulation of salicylic acid and jasmomic acid-ethylene signaling pathwaysMucheroOak Ridge National LaboratoryMicrobial Physiology
Tullman-ErcekEngineering bacterial microcompartments in Clostridium autoethanogenum to overcome bottlenecks in sustainable production of synthetic rubberMuellerNorthwestern UniversityMetabolic Engineering
AdamsMobile Genetic Elements In The ORFRC: Native Plasmids And Viral GenomesMukhopadhyayLawrence Berkeley National LaboratoryEnvironmental Microbiology
HofmockelThree Feet Deep: Abiotic and Biotic Drivers of Organic and Mineral Soil Carbon CyclingNaaskoPacific Northwest National LaboratoryMicrobiome
JuengerA Generalist-Specialist Tradeoff between Switchgrass Cytotypes Impacts Climate Adaptation and Geographic RangeNapierUniversity of Texas - AustinPlant Genomic Research
DocktyczPlant-microbe interfaces: Interrogating poplar fungal microbiome interactions using meta- transcriptomics and constructed communitiesNashOak Ridge National LaboratoryMicrobiome
StuartSystem-Level Analysis of Metabolism in a Novel Algicidal BacteriumNavidLawrence Livermore National LaboratoryComputational Biology
JewettUnearthing Enzyme Promiscuity with Cheminformatics to Design Biosynthetic Pathways Towards Novel BiomoleculesNiNorthwestern UniversityComputational Biology
DavisonApplying new models to describe biomembrane structure and solvent partitioning in living cell membranes and membrane mimicsNickelsOak Ridge National LaboratoryDeconstruction
AlexanderOptimal Experimental Design (OED) of Biological SystemsNiuBrookhaven National LaboratoryMetabolic Engineering
AbrahamExplainable-AI driven feature engineering of CRISPR-Cas9 sgRNA efficiency leads to quantum biological insights into genome editingNoshayOak Ridge National LaboratoryComputational Biology
NuccioCrosstalk: Interkingdom interactions in the mycorrhizal hyphosphere and ramifications for soil C cyclingNuccioLawrence Livermore National LaboratoryPlant-Microbe Interactions
ChurchConstruction of a Synthetic 57-Codon E. coli Chromosome and Tools for Microbial Genome-Scale RecodingNyergesHarvard UniversityMicrobial Biosystems Design
DinnenyMining Innovative Strategies for Stress-resilient Growth in Extremophyte Relatives of Brassicaceae Oil CropsOhStanford UniversityPlant Genomic Research
WrightonGenomes to Ecosystem Function: Targeting Critical Knowledge Gaps in Soil Methanogenesis and Translation to Updated Global Biogeochemical ModelsOliverioColorado State UniversityMicrobiome
KeaslingLigCHIP Technology for Bond-Specific Analysis of Lignocellulose Deconstructing EnzymesOnleyLawrence Berkeley National LaboratoryTechnology Development
DonohueCan Perennial Bioenergy Cropping Systems Promote Negative N2O Fluxes?OzluMichgan State UniversitySustainability
Solis-LemusIdentifying microbial drivers in biological phenotypes with a Bayesian Network Regression modelOzminkowskiUniversity of Wisconsin - MadisonComputational Biology
BlabyTime-series analysis of phenotypic and transcriptomic responses to nutrient stress in two bioenergy cropsPaapeBrookhaven National LaboratoryPlant Genomic Research
AbrahamUnderstanding the role of the Plasminogen-Apple-Nematode domain in host-plant invasion by pathogens.PalOak Ridge National LaboratoryPlant-Microbe Interactions
KeaslingMicrobiomes that metabolize lignin fragments obtained by chemical pretreatment of biomassParkLawrence Berkeley National LaboratoryLignin Valorization
LeakeyMetabolic Engineering of Triacylglycerols in Vegetative Tissues of SorghumParkUniversity of Illinois - Urbana-ChampaignPlant Feedstock
DonohueEffects of Chloramphenicol Treatment on Cellular Storage Granules and Membrane Structures in Rhodobacter sphaeroidesParrellUniversity of Wisconsin - MadisonMicrobial Physiology
SchoenigerDesign, delivery and expression of synthetic genetic elements in diverse microorganismsPatelSandia National LaboratoryMicrobial Biosystems Design
SchnellThe impact of LIP36 seed-specific expression on seed and oil yields in Camelina sativa and its associated transcriptome and metabolome changesAbdullahMichgan State UniversityMetabolic Engineering
LloydTen Pseudomonas spp. from Svalbard Active Layer are using amino acids for energyPaulUniversity of TennesseeBiogeochemistry
TuskanModeling and NMR approaches to probe spatial arrangements in biomass: Towards better and more predictive models of plant cell wall structuresAddisonOak Ridge National LaboratoryDeconstruction
SemrauMicrobial competition for copper can enhance greenhouse gas emissionsPengUniversity of Michigan - Ann ArborEnvironmental Microbiology
MichenerSystems metabolic engineering of Novosphingobium aromaticivorans for lignin valorizationAllemannOak Ridge National LaboratoryLignin Valorization
DonohueEngineering Novosphingobium aromaticivorans to Stoichiometrically Convert S-type Aromatics into PDCPerezUniversity of Wisconsin - MadisonMetabolic Engineering
AllenGenome-wide mapping of cis-regulatory elements and regulation of nitrate assimilation in Phaeodactylum tricornutumAllenJ. Craig Ventner InstituteMicrobial Biosystems Design
LeakeyUsing Cross-Scale Data to Constrain an Agro-Ecosystem Model to Produce Estimates of Miscanthus Production at a Field-ScalePetersenUniversity of Illinois - Urbana-ChampaignSustainability
AdamsBiofilm Distribution in a Porous Medium Reactor Simulating Shallow Subsurface ConditionsAltenburgLawrence Berkeley National LaboratoryEnvironmental Microbiology
KeaslingIntegrated chemical and biological catalysis for the valorization of ionic liquid-based biorefinery ligninPhamLawrence Berkeley National LaboratoryDeconstruction
TagaCorrinoids, a Class of Model Metabolites, Differentially Impact Isolation of Soil BacteriaAlvarez-AponteUniversity of California - BerkeleyEnvironmental Microbiology
OrphanCharacterization of viral assemblages in methane-saturated sediments and their Spatio-temporal DynamicsPhilosofCalifornia Institute of TechnologyEnvironmental Microbiology
SullivanNutrient Limitation Drives Dynamics of Host-virus InteractionsAminiTabriziOhio State UniversityEnvironmental Microbiology
DocktyczPlant-Microbe Interfaces: Quantification of Populus transcriptomic response to colonization by select bacterial symbiontsPiatkowskiOak Ridge National LaboratoryPlant-Microbe Interactions
LongEnhancing Vegetative Oil Content through Optimized Lipogenic FactorsAnaokarUniversity of Illinois - Urbana-ChampaignPlant Biosystems Design
KeaslingHigh-Throughput Screening of Wild Type and Engineered Plants using the JBEI Feedstocks-To-Fuels (F2F) PipelinePidatalaLawrence Berkeley National LaboratoryDeconstruction
NorthernThe Development of Plant and Soil Fabricated Ecosystems (EcoFABs) for Standardized Microbiome ExperimentsAndeerLawrence Berkeley National LaboratoryEnvironmental Microbiology
DavisonNoncellulosic biopolymer morphology and structural changes during real-time reaction studies.PingaliOak Ridge National LaboratoryDeconstruction
AntonopoulosRapid Design and Engineering of Smart and Secure Microbiological SystemsAntonopoulosArgonne National LaboratoryMicrobial Biosystems Design
BhatnagarPlant-Mycorrhizal-Decomposer Interactions and Their Impacts on Terrestrial BiogeochemistryPolicelliBoston UniversityPlant-Microbe Interactions
DocktyczPlant-Microbe Interfaces: Development of an experimental approach to achieve spatially resolved plant root-associated metaproteomics using an agar-plate systemAppidiOak Ridge National LaboratoryPlant-Microbe Interactions
SullivanViral ecogenomics across a permafrost thaw gradientPratamaOhio State UniversityMicrobiome
GuarnieriIMAGINE BioSecurity: Mesocosm based methods to evaluate biocontainment strategies and impact of industrial microbes upon native ecosystems.ArnoldsNational Renewable Energy LaboratoryMicrobial Biosystems Design
DavisonSolid state NMR characterization of lipid membrane and organic solvent induced effectsPuOak Ridge National LaboratoryDeconstruction
DonohueImproving Iron-Sulfur Cluster Stability in Zymononas mobilis to Increase Terpenoid ProductionAskenasyUniversity of Wisconsin - MadisonMetabolic Engineering
AdamsThe ENIGMA Subsurface Observatory: A high resolution approach to studying a shallow contaminated groundwater systemPuttLawrence Berkeley National LaboratoryEnvironmental Microbiology
AvalosMonochromatic control of bacteria/yeast consortia for fuel and chemical productionAvalosPrinceton UniversityMetabolic Engineering
VaralaInfernet: Gene Function Inference By Leveraging Large, Organ-Specific Expression Datasets And Validation Of Non-Redundant RegulatorsRanjanPurdue UniversityPlant Genomic Research
KeaslingCarbon Conserving Redox Balanced Co-Utilization of Aromatics and Sugar by Engineered Pseudomonas putidaAwasthiLawrence Berkeley National LaboratoryMicrobial Biosystems Design
JewettMechanistic Insights into Cell-free Gene Expression from an Integrated -Omics Analysis of Extract Preparation MethodsRasorNorthwestern UniversityMicrobial Biosystems Design
ChainA Bioinformatic Pipeline to Identify and Classify Potential Microbial Signatures from Fungal Sequencing Data Integrated with a Searchable Database of Described InteractionsBabinskiLos Alamos National LaboratoryComputational Biology
Rellan-AlvarezImproving candidate gene discovery by combining multiple genetic mapping datasetsRellan-AlvarezNorth Carolina State UniversityPlant Genomic Research
DocktyczPlant-Microbe Interfaces: Towards a rhizosphere on a chip for understanding physical and chemical transitions in multi-kingdom systemsRettererOak Ridge National LaboratoryMicrobial Physiology
WangElucidating the Evolution of Interspecies Metabolic Interactions within a Methanotroph-Cyanobacteria Coculture using Dynamic Genome-scale Metabolic ModelingBadrAuburn UniversityMicrobiome
AllenUnravelling xanthophyll pigment biosynthesis in algaeBaiJ. Craig Ventner InstituteMicrobial Biosystems Design
JuengerEnrichment of Soil Bacterial Taxa in Switchgrass (Panicum virgatum) Cropping Systems Across a Latitudinal GradientRickettsUniversity of Texas - AustinPlant-Microbe Interactions
KeaslingLiquid chromatography-mass spectrometry analysis of lignin depolymerized products from plant hydrolysatesBaidooLawrence Berkeley National LaboratoryTechnology Development
DonohueLipid Membrane Remodeling during Ethanol, Isobutanol, and Lignocellulosic Hydrolysate Stress in Zymomonas mobilisRivera VazquezUniversity of Wisconsin - MadisonConversion
EgbertIdentifying Data-Driven Gene Targets to Control Bacterial FitnessBalakrishnanPacific Northwest National LaboratoryComputational Biology
Northenm-CAFEs Phage Engineering for Targeted Editing of Microbial CommunitiesRobertsLawrence Berkeley National LaboratoryTechnology Development
BlumwaldThe Combined Effect of Abiotic Stresses Reveals Unique Cell Type-Specific Molecular Changes in PoplarBalasubramanianUniversity of California - DavisPlant Biosystems Design
AdamsGenome-scale metabolic and regulatory network reconstruction of Pyroccous furiosusRodionovUniversity of Georgia - AthensMetabolic Engineering
PakrasiDevelopment of Anabaena 33047, a fast-growing N2-fixing cyanobacterium, as a carbon neutral bioproduction platformBanerjeeWashington University of Saint LouisMicrobial Biosystems Design
KeaslingStructural characterization of lignin degrading enzyme PmdC, involved in the synthesis of polymer precursor 2-pyrone 4,6 dicarboxylic acid (PDC)RodriguesLawrence Berkeley National LaboratoryLignin Valorization
KeaslingMultiproduct Cellulosic Biorefinery Enables Market-Competitive Gasoline and Jet Fuel BlendstocksBaralLawrence Berkeley National LaboratorySustainability
GillDesign and Engineering of Synthetic Control StructuresRomero-SuarezUniversity of Colorado - BoulderMicrobial Biosystems Design
AllisonBacterial Community Response to Environmental Change Varies With Depth in the Surface SoilBarbourUniversity of California - IrvineEnvironmental Microbiology
TuskanDrought stress alters plant-microbe interactions but is contingent on host genetic background.RothOak Ridge National LaboratorySustainability
JuengerModeling Environmental Influences on Biomass Composition of Diverse Switchgrass GenotypesBartleyUniversity of Texas - AustinPlant Feedstock
RouxPhage diversity and activity associated with seasonal changes in a model montane soil ecosystemRouxLawrence Berkeley National LaboratoryEnvironmental Microbiology
TuskanTechno-Economic Analysis and Life Cycle Assessment of a biorefinery utilizing reductive catalytic fractionation (RCF)BartlingOak Ridge National LaboratorySustainability
NeidleDesign, Detect, Evolve: Engineering Syringol Degradation in ADP1BaughUniversity of Georgia - AthensMetabolic Engineering
NorthenTargeted DNA Editing Within Microbial CommunitiesRubinLawrence Berkeley National LaboratoryMicrobial Biosystems Design
BennetzenSystems analysis of the beneficial associations of sorghum with arbuscular mycorrhizal fungi studied with genetics, genomics, imaging and microbiomicsBennetzenUniversity of Georgia - AthensPlant-Microbe Interactions
DocktyczPlant-Microbe Interfaces: Beyond symbiosis, fungi can specifically perceive and use lipochitooligosaccharides to organize and modulate the development of microbial communitiesRushOak Ridge National LaboratoryMicrobial Physiology
LeakeySustainable Production of Acrylic Acid via 3-Hydroxypropionic Acid from Lignocellulosic BiomassBhagwatUniversity of Illinois - Urbana-ChampaignSustainability
TrinhUnderstanding Robustness of Yarrowia lipolytica for Undetoxified Biomass Hydrolysate UtilizationRyuUniversity of TennesseeConversion
BlabyUnderstanding poplar and sorghum micronutrient stress by integrating functional genomics with molecular-level experimentationBlabyBrookhaven National LaboratoryPlant Feedstock
AbrahamUnderstanding microbial establishment in the rhizosphere using quantitative trait-locus mapping and CRISPR Cas editingSackoOak Ridge National LaboratoryMicrobial Biosystems Design
HofmockelVisually Mapping Phenotypes and Community Interactions at the Microbial ScaleSadlerPacific Northwest National LaboratoryMicrobiome
Pett-RidgeSIP-OMICS: A Semi-Automated Pipeline for Isotopically-Targeted Community Analysis and MetagenomicsBlazewiczLawrence Livermore National LaboratoryEnvironmental Microbiology
AlonsoIdentification of Pennycress (Thlaspi arvense L.) Proteins that Influence Lipid Droplet Formation and Modulate Neutral Lipid AccumulationSagunUniversity of North TexasPlant Genomic Research
DunbarMicrobial regulation of soil water repellency to control soil degradationBoakLos Alamos National LaboratoryEnvironmental Microbiology
Salvachua RodriguezCross-kingdom Comparative Genomics of Aromatic Catabolic Pathways in Fungi and BacteriaSalvachua RodriguezNational Renewable Energy LaboratoryLignin Valorization
TuskanDeploying docking calculations alongside kinetic model parameterization to elucidate mechanisms controlling metabolism in Clostridium thermocellumBoorlaOak Ridge National LaboratoryConversion
ZanghelliniDesigning Novel Enzymes for Complete Degradation of Recalcitrant PolyamidesSanghaArzeda CorpComputational Biology
BouskillClimate history dictates microbial metabolic response to drought stress: from semi-arid soils to tropical forest precipitation gradientsBouskillLawrence Berkeley National LaboratoryEnvironmental Microbiology
SedbrookPennycress as an Emerging Bioenergy Crop: How Does the Microbiome Impact Performance and Resilience Factors in the inland Pacific Northwest?SanguinetIllinois State UniversityMicrobiome
FirestoneSpatial Turnover of Soil Viral Communities and Genotypes Overlain by Cohesive Responses to Moisture in GrasslandsSantos-MedellinUniversity of California - BerkeleyEnvironmental Microbiology
StuartDynamic Phaeodactylum tricornutum Exometabolites Shape Surrounding Bacterial CommunitiesBrissonLawrence Livermore National LaboratoryMicrobiome
ZhaoPopulation phenomics of Issathenkia orientalis for creation of a safer and more robust chassis for next-generation industrial biotechnologySasakiUniversity of Illinois - Urbana-ChampaignConversion
BaxterSynthetic Genetic Circuits to Engineer Water Use Efficiency, Photosynthetic Efficiency, and BiocontainmentBrophyDonald Danforth Plant Science CenterPlant Biosystems Design
DonohueCrabtree/Warburg-like aerobic xylose fermentation by engineered Saccharomyces cerevisiaeSatoUniversity of Wisconsin - MadisonMetabolic Engineering
JewettPhylogenomics of Solvent-Producing Clostridium Species To Enable Carbon-Negative Production of Acetone and IsopropanolBrownNorthwestern UniversityMicrobial Biosystems Design
DocktyczBio-Scales: Defining gene function and its connection to ecosystem processesSchadtOak Ridge National LaboratoryMicrobiome
DunbarConstructing microbial networks from Genome Scale Metabolic Models.BrunnerLos Alamos National LaboratoryComputational Biology
DocktyczPlant-Microbe Interfaces: Identification of genes controlled by a plant-responsive transcription factor in the Populus endophyte Pseudomonas GM79SchaeferOak Ridge National LaboratoryPlant-Microbe Interactions
TuskanCandidate genes for lignin structure identified through genome-wide association of naturally variant PopulusBryantOak Ridge National LaboratoryLignin Valorization
OlsonComparison of Michaelis-Menten and Elementary Decomposition Rate Kinetics for Predicting Enzyme Progress CurvesSchroderDartmouth UniversityBiogeochemistry
BurleyRCSB Protein Data Bank: Connecting genes to structures to ecosystemsBurleyRutgers UniversityComputational Biology
ChurchGenetic Tools for Photosynthetic Microbes; Toward Genome-scale EngineeringSchubertHarvard UniversityTechnology Development
GuarnieriIMAGINE BioSecurity: Biocontainment of Genetically Engineered CyanobacteriaSebestaNational Renewable Energy LaboratoryMicrobial Biosystems Design
CahillDirect measure of amino acid distribution across Populus trichocarpa roots in a rhizosphere-on-a-chip habitatCahillOak Ridge National LaboratoryTechnology Development
SchnellHigh-Throughput Detection of T-DNA Insertion Sites for Multiple Transgenes in Complex GenomesSederoffMichgan State UniversityPlant Biosystems Design
Amador-NoguezApplication of a Novel 2H Isotope Tracer Approach to Characterizing Metabolic Thermodynamics in C. thermocellumCallaghanUniversity of Wisconsin - MadisonMetabolic Engineering
DonohueLinking Microbial Funneling to Hydrogenolysis-Based Lignin Depolymerization to Produce 2-Pyrone-4,6-Dicarboxylic Acid from Phenolic MonomersSenerUniversity of Wisconsin - MadisonLignin Valorization
DunbarNitrogen Availability Strongly Affects Carbon Cycling by Sub-Surface Microbial CommunitiesSevantoLos Alamos National LaboratoryMicrobiome
DonohueAnalysis of SI Engine Alternative Fuels for Mixture Formation Behavior Related to Particulate Matter Formation with a Representative Gasoline Surrogate: Application to 2-Methyl-3-Buten-2-ol (Methyl Butenol, MBO)ShenUniversity of Wisconsin - MadisonSustainability
LeakeyRefining Metabolic Engineering Strategies for Hyperaccumulation of Triacylglycerol in OilcaneCaoUniversity of Illinois - Urbana-ChampaignMetabolic Engineering
YoungAccelerating Strain Phenotyping with Desorption Electrospray Ionization-Mass Spectrometry Imaging and Untargeted Molecular Analysis of Intact Microbial ColoniesShepardVanderbilt UniversityMetabolic Engineering
MohimaniHypoNPAtlas: an Atlas of hypothetical natural product for mass spectrometry database searchCaoCarnegie Mellon UniversityComputational Biology
NicolasFunctional genomics of replicating microbes and viruses following rewetting of a Mediterranean grassland soilSieradzkiLawrence Livermore National LaboratoryEnvironmental Microbiology
AdamsDynamics of nitrate reduction through process partitioning in a synthetic communityCarrLawrence Berkeley National LaboratoryEnvironmental Microbiology
LeakeyOptimization of Solvent-Free Enzymatic Esterification of Free Fatty Acids using Taguchi Design of ExperimentsSinghUniversity of Illinois - Urbana-ChampaignConversion
WestonMicrobiome transfer and synthetic community approaches for determining the genetic and environmental factors underlying mutualism within a Sphagnum peatmoss systemCarrellOak Ridge National LaboratoryPlant-Microbe Interactions
SchnellA mitochondrial carrier protein from Chlamydomonas alter the root architecture in Camelina.SinghalMichgan State UniversityPlant Genomic Research
YeatesEnabling Structure Determination of Challenging Samples with new cryo Electron Microscopy MethodsCastells GraellsUniversity of California - Los AngelesTechnology Development
NorthenThe Twin Ecosystems Project: A New Capability for Field and Laboratory Ecosystems Coupled by Sensor Networks and Autonomous ControlsCeja-NavarroLawrence Berkeley National LaboratoryEnvironmental Microbiology
NorthenRhizosphere Biogeography of Brachypodium distachyon and Microbial Plant-Growth Promoting TraitsChakrabortyLawrence Berkeley National LaboratoryPlant-Microbe Interactions
LongSustainable Improvement of C4 Photosynthesis in Bioenergy GrassesChanUniversity of Illinois - Urbana-ChampaignPlant Biosystems Design
DonohueA High Solids Field-To-Fuel Research Pipeline to Identify Interactions Between Feedstocks and Biofuel ProductionChandrasekarUniversity of Wisconsin - MadisonDeconstruction
ChurchA workflow for the systems-level analysis, design, and engineering of genomically recoded organismsChiappino-PepeHarvard UniversityComputational Biology
NorthernExamining Molecular Mechanisms Selecting for Rhizosphere BacteriaChiniquyLawrence Berkeley National LaboratoryMicrobial Biosystems Design
DonohueCharacterizing fungal inhibitors from drought-stressed switchgrassChipkarUniversity of Wisconsin - MadisonPlant Genomic Research
JewettTemperature drives substantial metabolic changes in the gas fermenting Clostridium autoethanogenum as revealed by multi-omics characterizationChiraniaNorthwestern UniversityMicrobial Biosystems Design
JiaoSequence Entanglement with Post-Entanglement Modifications Enhances Functionality and Biosecurity of Entanglement PairsChlebekLawrence Livermore National LaboratoryMicrobial Biosystems Design
LeakeyHigh Throughput Screening of Mutant Libraries for Producing Medium Chain Fatty Acids Using Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Analysis of Microbial ColoniesChoeUniversity of Illinois - Urbana-ChampaignMetabolic Engineering
KeaslingOne-pot deconstruction and conversion of dry and ensiled sorghumChoiLawrence Berkeley National LaboratoryDeconstruction
TuskanIdentification and validation of a key gene contributing to the differential flowering time of switchgrass ecotypesChoiOak Ridge National LaboratoryPlant Feedstock
Pett-RidgeThe biogeographic distribution of genomic traits between soil microbial communitiesChuckranLawrence Livermore National LaboratoryEnvironmental Microbiology
LeakeyAnalyzing Lipid Synthesis and Turnover Using Stable IsotopesClarkUniversity of Illinois - Urbana-ChampaignPlant Feedstock
SchoenigerExpanding the Utility of Integrases for Genome Editing and Stabilizing Gene Modules in Target BacteriaClarkSandia National LaboratoryMicrobial Biosystems Design
StuartSiderophore-Producing Phycosphere Bacteria Alleviate Iron Limitation Stress in Phaeodactylum tricornutumCoffeyLawrence Livermore National LaboratoryMicrobiome
ColeDefining the Influence of Environmental Stress on Bioenergy Feedstocks at Single-Cell ResolutionColeLawrence Berkeley National LaboratoryPlant Genomic Research
SedbrookThe Impact of Waterlogging on Pennycress Morphology and Yield and Modeling Effective Water Availability of Pennycress Natural PopulationsCombs-GiroirIllinois State UniversitySustainability
BaxterEngineering enhanced photosynthesis and water use efficiency in SorghCousinsDonald Danforth Plant Science CenterPlant Biosystems Design
HofmockelThe Soil Lipidome is a Robust Indicator of the Microbial Community Response to Rewetting Following a Summer DroughtCouvillionPacific Northwest National LaboratoryMicrobiome
SchoenigerRepurposing Cas13 for Precise Translational Inhibition and ActivationCressSandia National LaboratoryTechnology Development
CuevasGenetic mapping of sugarcane aphid resistance in sorghum line SC112-14CuevasUSDA-ARS-MayaguezPlant Genomic Research
KeaslingField testing of transgenic Sorghum variants, overexpressing 4 types of aromatic compoundsDaltonLawrence Berkeley National LaboratoryPlant Feedstock
RheeNanoparticle-Mediated Transformation of Sorghum towards the Determination of a Subcellular Metabolic Network MapDavisCarnegie Institution for SciencePlant Genomic Research
TuskanCatalytic Upgrading of Bioderived Alcohols to Sustainable Aviation Fuel (SAF)DavisonOak Ridge National LaboratoryTechnology Development
Electro-Optic Fluorescence Lifetime Microscopy (EO-FLIM)BowmanStanford UniversityBioimaging
Burnum-JohnsonSpatiotemporal Mapping of Perturbations in a Naturally Evolved Fungal Garden Microbial ConsortiumBurnum-JohnsonPacific Northwest National LaboratoryMicrobiome
Quantum Dot Toolkit for Multimodal Hyperspectral Bioimaging CameronUniversity of Colorado, BoulderBioimaging
CannonPrinciples of Fungal Metabolism, Growth and Bacterial InteractionsCannonPacific Northwest National LaboratoryEnvironmental Microbiology
CannonMetabolic Modeling and Engineering of Enhanced Anaerobic Microbial Ethylene SynthesisCannonOhio State UniversityMicrobial Biosystems Design
Live-cell, quantum dot-based tracking of plant & microbial extracellular vesicles CaplanUniversity of DelawareBioimaging
Transient delivery of Cas9 using Agrobacterium for genome editingChappellOak Ridge National LaboratoryPlant Genomic Research
Multimodal single-cell/particle imaging and engineering for energy conversion in bacteria ChenCornell UniversityBioimaging
Deep Chemical Imaging of the Rhizosphere CiceroneGeorgia Tech Research Corporation Bioimaging
Plasmonic Nanorod Probes for in vivo SERS Detection inside Whole Plant CellsCupil-GarciaDuke UniversityBioimaging
Probabilistic Annotation and Ensemble Metabolic Modeling in KBaseD'haeseleerLawrence Livermore National LaboratoryComputational Biology
Probing Photoreception with New Quantum-Enabled Imaging EvansPacific Northwest National LaboratoryBioimaging
Biological Imaging using Entangled Photons GoodsonUniversity of Michigan, Ann ArborBioimaging
Ultra-Sensitive High-Resolution Label-Free Nonlinear Optical Microscopy for Imaging Plant-Microbe Interactions in Vivo JiUniversity of California - Berkeley Bioimaging
AllenDevelopment of high-throughput light-sheet fluorescence lifetime microscopy for 3D functional imaging of metabolic pathways in plants and microorganisms KasevichStanford UniversityBioimaging
Declining Carbohydrate Solubilization with Increasing Solids Loading During Fermentation of Cellulosic Feedstocks by Clostridium thermocellum: Documentation and Diagnostic TestsKubisOak Ridge National LaboratoryConversion
The 3DQ Microscope: A Novel System Using Entangled Photons to Generate Volumetric Fluorescence and Scattering Images for Bioenergy Applications LaurenceLawrence Livermore National LaboratoryBioimaging
Understanding Plant Signaling via Innovations in Probe Delivery and Imaging LiuUniversity of ChicagoBioimaging
Airy light-sheet microscopyLuoUniversity of Central FloridaBioimaging
A Quantum Enhanced X-ray Microscope McSweeneyBrookhaven National LaboratoryBioimaging
Quantum Ghost Imagingfor Ultra-Low Light Plant Imaging: the Entaglement SourceMeierLos Alamos National LaboratoryBioimaging
Reflectance FTIR for enabling label-free plant cheometricsMoralesLos Alamos National LaboratoryBioimaging
Understanding Plant Signaling via Innovations in Probe Delivery and Imaging MorganUniversity of ChicagoBioimaging
Expanding the utility and range of quantum and polymer dots for multiplexed super resolution fluorescence imaging in plants RiahinUniversity of Maryland Baltimore CountyBioimaging
Bacterial Membrane Potential: A Case Study with Bacillus SubtilisRoyUniversity of California, Los AngelesBioimaging
Development and implementation of an in situ high-resolution isotopic microscope for measuring metabolic interactions in soil mesocosms ShankUniversity of Massachusetts Medical SchoolBioimaging
Pett-RidgeNovel in-vivo visualization of bioenergy metabolic and cellular phenotypes in living woody tissues SieburthUniversity of Utah Bioimaging
TuskanIntegrating synthetic biology and polysaccharide synthesis for designer polymers with tunable propertiesSmithOak Ridge National LaboratoryDeconstruction
Pett-RidgeSoil habitats and water limitation shape microbial traits correlated with formation of mineral-associated organic matterSokolLawrence Livermore National LaboratoryEnvironmental Microbiology
HofmockelOmics-enabled global gapfilling (OMEGGA) for phenotype-consistent metabolic network reconstruction of microorganisms and communitiesSongPacific Northwest National LaboratoryMicrobiome
AdamsFrom fast to furious phenotyping of microbes: advancing the understanding of microbial diversities and gene functions using droplet microfluidics and high throughput sequencingSongLawrence Berkeley National LaboratoryEnvironmental Microbiology
KeaslingComparison of Isoprenol Production from Sorghum Biomass Hydrolysates using Engineered Microbial HostsSrinivasanLawrence Berkeley National LaboratoryConversion
Expanding the utility and range of quantum and polymer dots for multiplexed super resolution fluorescence imaging in plants StaceyUniversity of Missouri, ColumbiaBioimaging
LloydHigh enzyme stability as a feature to enable slow microbial life in the subsurfaceSteenUniversity of TennesseeEnvironmental Microbiology
HungateTemperature sensitivity of soil bacterial networks from the Arctic to the TropicsStoneNorthern Arizona UniversityEnvironmental Microbiology
TuskanSystems biology approaches uncover distinct genes controlling switchgrass biomass and heightSullivanOak Ridge National LaboratoryComputational Biology
ZhaoExamining organic acid production and model-driven strategies in Issatchenkia orientalisSuthersUniversity of Illinois - Urbana-ChampaignMetabolic Engineering
GuarnieriCombinatorial Biocontainment Design and DNA Barcode GenotypingSuzukiNational Renewable Energy LaboratoryMicrobial Biosystems Design
AbrahamDevelopment of CRISPR-Cas editing tools in Sphaerulina musiva towards controlling its establishment and pathogenicity in Populus ecosystemsTannousOak Ridge National LaboratoryMicrobial Biosystems Design
AdamsEnergy and Carbon Optimized Conversion of Lignocellulose to Biobased Chemicals by Extreme ThermophilesTanweeUniversity of Georgia - AthensMetabolic Engineering
TasMicrobial controls on biogeochemical cycles in permafrost ecosystemsTasLawrence Berkeley National LaboratoryMicrobiome
TuskanUnderstanding the genetic basis of drought tolerance In Populus trichocarpaTaylorOak Ridge National LaboratoryPlant Genomic Research
TfailyMetaboDirect: An analytical pipeline for FT-ICR mass spectrometry dataTfailyArizona Board of Regents, The University of ArizonaComputational Biology
GuarnieriModeling Bacterial Metabolism and Expression to Develop Biocontainment StrategiesTibocha-BonillaNational Renewable Energy LaboratoryMicrobial Biosystems Design
ZerbeImproved Biofuel Production through Discovery and Engineering of Terpene Metabolism in Switchgrass.TiedgeUniversity of California - DavisPlant Genomic Research
LeakeyMetabolic Engineering of Issatchenkia orientalis for succinic acid productionTranUniversity of Illinois - Urbana-ChampaignMetabolic Engineering
JuengerAgrobacterium-mediated Transformation of P. halliiTrieuUniversity of Texas - AustinPlant Genomic Research
TrinhControlling Selectivity of Modular Microbial Biosynthesis of Designer Acetate Esters through Proteome ReallocationTrinhUniversity of TennesseeMicrobial Biosystems Design
Pett-RidgeEnvironmental conditions shape active viral community structure and virus-host dynamics in soil ecosystemsTrublLawrence Livermore National LaboratoryEnvironmental Microbiology
MouserEnvironmental and Engineered Factors Influence Membrane Features of Shale TaxaUgwuodoUniversity of New HampshireEnvironmental Microbiology
UmenCuration and Characterization of Conserved Green Lineage ProteinsUmenDonald Danforth Plant Science CenterPlant Genomic Research
JiaoRedesigning the Escherichia coli genome with a 19-Amino Acid AlphabetUrtechoLawrence Livermore National LaboratoryTechnology Development
KeaslingHigh Throughput Bioengineering Using a Microfluidic PlatformVaidyanathanLawrence Berkeley National LaboratoryTechnology Development
AdamsInvestigating the abiotic control of denitrification processes using synthetic communities and laboratory simulationsValenzuelaLawrence Berkeley National LaboratoryEnvironmental Microbiology
JiaoProgrammed Lysis of Cells in Response to Electrogenetic InputsVanArsdaleLawrence Livermore National LaboratoryMicrobial Biosystems Design
Integrative Imaging of Plant Roots during Symbiosis with Mycorrhizal Fungi VasdekisUniversity of IdahoBioimaging
Integrative, Single-Cell, Imaging of Gene Expression and Metabolic NoiseVasdekisUniversity of IdahoBioimaging
TuskanQuantitative trait loci (QTL) mapping: a novel method for dissecting the genetic basis of complex phenotypes in bacteriaVasilivaOak Ridge National LaboratoryComputational Biology
NorthenThe Filamentous Fungus Trichoderma atroviride as a Model System for Understanding Fungal Genetics, the Plant-Fungal Symbiosis, and Interactions with Diverse BacteriaVillalobosLawrence Berkeley National LaboratoryMicrobial Biosystems Design
LloydComparative metagenomics of Arctic landscapesVishnivetskayaUniversity of TennesseeEnvironmental Microbiology
DunbarUtilization of Lignocellulosic Biofuel Conversion Residue by Diverse MicroorganismsWadlerUniversity of Wisconsin - MadisonMicrobial Physiology
AdamsDiurnal and Seasonal Fluctuations with the Subsurface: A 17-Week Survey of Groundwater and Sediment in 27 Contaminated WellsWalkerLawrence Berkeley National LaboratoryEnvironmental Microbiology
WinklerExperimental models bridging single cell-to-ecosystem scales to evaluate climate-wetland feedback mechanismsWangUniversity of WashingtonEnvironmental Microbiology
BetenbaughMetabolic flux analysis of an engineered sucrose-secreting strain of the cyanobacterium Synechococcus elongatusWangJohns Hopkins UniversityMetabolic Engineering
AdamsHigh-Throughput Genetic Analysis of Rhodanobacter Reveals Genes Important for Metal ToleranceWangLawrence Berkeley National LaboratoryEnvironmental Microbiology
DinnenyCell type specific abiotic stress responses among closely related Brassicaceae species reveal how stress tolerance in extremophytes differ from stress-sensitive modelsWangStanford UniversityPlant Genomic Research
JonikasTransforming our understanding of chloroplast-associated genes through comprehensive characterization of protein localizations and protein-protein interactionsWangPrinceton UniversityPlant Genomic Research
DavisonEffect of Cyrene Pretreatment on Switchgrass Lignin StructureWangOak Ridge National LaboratoryDeconstruction
AdamsA Field-Scale Omics-Enabled Groundwater Reactive Transport ModelWangLawrence Berkeley National LaboratoryEnvironmental Microbiology
TuskanGenome-wide association studies of drought stress and water use efficiency related traits in switchgrassWangOak Ridge National LaboratorySustainability
TuskanContinuous hydrodeoxygenation of lignin to jet-range aromatic hydrocarbonsWebberOak Ridge National LaboratoryLignin Valorization
AntonopoulosCRISPR-Act: AI-guided Prediction of a CRISPR Kill-switch Across Physiological ContextsWeinbergArgonne National LaboratoryMicrobial Biosystems Design
Inorganic voltage nanosensors for bioelectricity studies in bacterial communities WeissUniversity of California, Los AngelesBioimaging
Quantum Ghost Imaging of Water Content and Plant Health with Entangled Photon Pairs Werner Los Alamos National LaboratoryBioimaging
WestphelingDevelopment of emerging model microorganisms: Megasphaera elsdenii for biomass and organic acid upgrading to fuels and chemicals.WestphelingUniversity of Georgia - AthensMetabolic Engineering
WheelerTools for Faster and More Sensitive Sequence Annotation, and Visualization of Those AnnotationsWheelerUniversity of MontanaComputational Biology
GilbertPredicting complex microbial temperature responses across scalesWieczynskiDuke UniversityEnvironmental Microbiology
Probing Lignin Deconstruction and Catabolism in Soil Pseudomonas speciesWilkesNorthwestern UniversityDeconstruction
ArkinScience Focus Areas use KBase to share new tools and dataWood-CharlsonLawrence Berkeley National LaboratoryComputational Biology
HofmockelFunctional and structural characterization of soil viral auxiliary metabolic genesWuPacific Northwest National LaboratoryMicrobiome
EvelandUsing Molecular Genetics and Precision Phenotyping to Map Gene Function Contributing to Drought Resilience in SorghumXiaoDonald Danforth Plant Science CenterPlant Genomic Research
BlabyTranscriptional regulatory mechanisms linking secondary cell wall biosynthesis and iron homeostasis in PopulusXieBrookhaven National LaboratoryPlant Genomic Research
GuarnieriIMAGINE BioSecurity: Metabolic Modeling-Enabled Biocontainment Redesign in Microbial ChassesXiongNational Renewable Energy LaboratoryMicrobial Biosystems Design
TuskanUAV- based sustainability traits modeling of field-grown switchgrass GWAS populationXuOak Ridge National LaboratorySustainability
AlonsoUsing 13C-labeling to Unravel the Temporal and Spatial Production of Seed Oil in Developing Embryos of Pennycress, a Promising Source for Sustainable Aviation FuelYadavUniversity of North TexasPlant Genomic Research
LeakeyMetabolic Engineering Yarrowia lipolytica to Produce 3-acetyl-1,2-diacyl-sn-glycerolYanUniversity of Illinois - Urbana-ChampaignMetabolic Engineering
KeaslingComparing In Planta and Microbial Production of BioproductsYangLawrence Berkeley National LaboratorySustainability
LeakeyResponses of Total (DNA) and Metabolically Active (RNA) Microbial Communities in Miscanthus x giganteus Cultivated SoilYangUniversity of Illinois - Urbana-ChampaignEnvironmental Microbiology
BlumwaldTransgenic poplar analysis of native and synthetic inducible promoters for sensing abiotic stress and tissue specificity from poplar cis-regulatory elements.YangUniversity of California - DavisPlant Biosystems Design
DocktyczPlant-Microbe Interfaces: Identification of PtLecRLK1-based signaling cascade in Laccaria bicolor root colonizationYaoOak Ridge National LaboratoryPlant-Microbe Interactions
YooAutomated knowledge harvesting from literature text, tables, and figuresYooBrookhaven National LaboratoryComputational Biology
LeakeyGene duplication and single nucleotide polymorphisms (SNPs) via adaptive laboratory evolution (ALE) of engineered Yarrowia lipolytica enabled the efficient utilization of sugars in lignocellulosic hydrolysateYookUniversity of Illinois - Urbana-ChampaignConversion
NorthHigh Throughput Screening of Enzymes that Bolster Anaerobic Ethylene SynthesisYoungOhio State UniversityMetabolic Engineering
YoungSystems biology to enable modular metabolic engineering of fatty acid production in cyanobacteriaYoungVanderbilt UniversityMetabolic Engineering
LeakeyEngineering Cyclopropane Fatty Acid Accumulation in Plant Vegetative TissuesYuUniversity of Illinois - Urbana-ChampaignPlant Feedstock
LuGenetic Engineering of Camelina to Improve Seed Oil YieldYuMontana State UniversitySustainability
KeaslingIsoprenol production in P. putida KT2440YunusLawrence Berkeley National LaboratoryMetabolic Engineering
WhitmanA community-based approach to understanding fungal and bacterial responses to wildfireZebaUniversity of Wisconsin - MadisonEnvironmental Microbiology
ZhangA gene-editing system for large-scale fungal phenotyping in a model wood decomposerZhangUniversity of MinnesotaMicrobial Biosystems Design
BennetzenAdaptive GWAS using MINE for discovery of structural equations in the AMF-Sorghum ProjectZhangUniversity of Georgia - AthensPlant-Microbe Interactions
LeakeyDetermining Profit-Maximizing Dynamic Mix of Nitrogen Rate and Stand Age in Miscanthus and Switchgrass ProductionZhangUniversity of Illinois - Urbana-ChampaignSustainability
BlabyCharacterization of a Novel Zinc Chaperone in ArabidopsisZhangBrookhaven National LaboratoryPlant Genomic Research
KeaslingCharacterization and Stress Response of Monolignol p-Hydroxybenzoyltransferase in PoplarZhaoLawrence Berkeley National LaboratoryPlant Feedstock
AllenModeling carbon metabolism of the diatom Phaeodactylum tricornutum during nitrogen starvation and during high light and low light conditionsZhengJ. Craig Ventner InstituteMetabolic Engineering
LuCamelina growth impacted by bacteria and nitrogen stressZhengMontana State UniversitySustainability
LeakeyGenomics of Winter-hardiness and Yield in Diverse Miscanthus GermplasmZhengUniversity of Illinois - Urbana-ChampaignPlant Genomic Research
KeaslingDeep Neural Network-Guided Design of Orthogonal Trans-Elements for Plant Synthetic BiologyZhouPlant Biosystems Design
ChainDevelopment of untargeted metabolomics approaches to study bacterial-fungal co-culturesZunigaLos Alamos National LaboratoryMicrobiome
SchnellThe impact of LIP36 seed-specific expression on seed and oil yields in Camelina sativa and its associated transcriptome and metabolome changesAbdullah