Research Publications
This bibliography contains publications from research funded by the Genomic Science Program. Most publications are from FY 2021 and beyond, though older publications appear in some cases. If you are a GSP-funded researcher and don’t see your publications listed below, contact Marissa Mills (millsmd@ornl.gov) to get your publications added.
Year | DOI | Authors | Title | Journal | Volume/Pages |
---|---|---|---|---|---|
2023 | 10.1002/anie.202212440 | Zhou, Y., E. N. Mirts, S. Yook, M. Waugh, R. Martini, Y.-S. Jin and Y. Lu | Reshaping the 2-Pyrone Synthase Active Site for Chemoselective Biosynthesis of Polyketides | Angewandte Chemie International Edition | 62(5) e202212440 |
2023 | 10.1021/acs.analchem.2c04845 | Zhou, S., Z. Fatma, P. Xue, S. Mishra, M. Cao, H. Zhao and J. V. Sweedler | Mass Spectrometry-Based High-Throughput Quantification of Bioproducts in Liquid Culture | Analytical Chemistry | 95(8) 4067–76 |
2023 | 10.1016/j.ijbiomac.2023.124743 | Zhou, F., H. Wu, Y. Chen, M. Wang, G. A. Tuskan and T. Yin | Function and molecular mechanism of a poplar placenta limited MIXTA gene in regulating differentiation of plant epidermal cells | International Journal of Biological Macromolecules | 242 124743 |
2023 | 10.1111/gcbb.13021 | Zhang, N., B. P. Sharma and M. Khanna | Determining spatially varying profit-maximizing management practices for miscanthus and switchgrass production in the rainfed United States | GCB Bioenergy | 15(3) 271–82 |
2023 | 10.1016/j.copbio.2022.102870 | Zha, J., Z. Zhao, Z. Xiao, T. Eng, A. Mukhopadhyay, M. A. G. Koffas and Y. J. Tang | Biosystem design of Corynebacterium glutamicum for bioproduction | Current Opinion in Biotechnology | 79 102870 |
2023 | 10.3390/plants12081657 | Yuan, G., Y. Liu, T. Yao, W. Muchero, J.-G. Chen, G. A. Tuskan and X. Yang | eYGFPuv-Assisted Transgenic Selection in Populus deltoides WV94 and Multiplex Genome Editing in Protoplasts of P. trichocarpa x P. deltoides Clone ’52-225’ | Plants | 12(8) 1657 |
2023 | 10.1128/aem.01753-22 | Yayo, J., T. Rydzak, T. Kuil, A. Karlsson, D. J. Harding, A. M. Guss and A. J. A. v. Maris | The Roles of Nicotinamide Adenine Dinucleotide Phosphate Reoxidation and Ammonium Assimilation in the Secretion of Amino Acids as Byproducts of Clostridium thermocellum | Applied and Environmental Microbiology | 89(1) e01753-22 |
2023 | 10.1093/hr/uhad085 | Yao, T., G. Yuan, H. Lu, Y. Liu, J. Zhang, G. A. Tuskan, W. Muchero, J.-G. Chen and X. Yang | CRISPR/Cas9-based gene activation and base editing in Populus | Horticulture Research | uhad085 |
2023 | 10.1186/s13068-023-02302-6 | Yang, J., T. Sooksa-nguan, B. Kannan, S. Cano-Alfanar, H. Liu, A. Kent, J. Shanklin, F. Altpeter and A. Howe | Microbiome differences in sugarcane and metabolically engineered oilcane accessions and their implications for bioenergy production | Biotechnology for Biofuels and Bioproducts | 16(1) 56 |
2023 | 10.1016/j.ymben.2023.01.003 | Yan, Q., T. B. Jacobson, Z. Ye, Y. R. Cortés-Pena, S. S. Bhagwat, S. Hubbard, W. T. Cordell, R. E. Oleniczak, F. V. Gambacorta, J. R. Vazquez, E. V. Shusta, D. Amador-Noguez, J. S. Guest and B. F. Pfleger | Evaluation of 1,2-diacyl-3-acetyl triacylglycerol production in Yarrowia lipolytica | Metabolic Engineering | 76 18–28 |
2023 | US11629356B2 | Xie, M., W. Muchero, J.-G. Chen and G. A. Tuskan | Regulating lignin biosynthesis and sugar release in plants | United States Patent | UT Battelle LLC |
2023 | 10.1016/j.mec.2023.e00220 | Wu, Z.-Y., W. Sun, Y. Shen, J. Pratas, P. F. Suthers, P.-H. Hsieh, S. Dwaraknath, J. D. Rabinowitz, C. D. Maranas, Z. Shao and Y. Yoshikuni | Metabolic engineering of low-pH-tolerant non-model yeast, Issatchenkia orientalis, for production of citramalate | Metabolic Engineering Communications | 16 e00220 |
2023 | 10.1128/aem.00500-23 | Wu, X., S. Gushgari-Doyle, L. M. Lui, A. J. Hendrickson, Y. Liu, S. Jagadamma, T. N. Nielsen, N. B. Justice, T. Simmons, N. J. Hess, D. C. Joyner, T. C. Hazen, A. P. Arkin and R. Chakraborty | Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical Zone | Applied and Environmental Microbiology | e00500-23 |
2023 | 10.1016/j.engmic.2023.100074 | Wei, H., W. Wang, Y.-C. Chou, M. E. Himmel, X. Chen, Y. J. Bomble and M. Zhang | Prospects for engineering Ralstonia eutropha and Zymomonas mobilis for the autotrophic production of 2,3-butanediol from CO2 and H2 | Engineering Microbiology | 3(2) 100074 |
2023 | 10.1021/acs.est.2c06674 | Wang, Y., N. R. Baral, M. Yang and C. D. Scown | Co-Processing Agricultural Residues and Wet Organic Waste Can Produce Lower-Cost Carbon-Negative Fuels and Bioplastics | Environmental Science & Technology | 57(7) 2958–69 |
2023 | 10.1016/j.biortech.2022.128216 | Walls, L. E., P. Otoupal, R. Ledesma-Amaro, S. B. Velasquez-Orta, J. M. Gladden and L. Rios-Solis | Bioconversion of cellulose into bisabolene using Ruminococcus flavefaciens and Rhodosporidium toruloides | Bioresource Technology | 368 128216 |
2023 | 10.1021/acs.chemrev.2c00403 | Volk, M. J., V. G. Tran, S.-I. Tan, S. Mishra, Z. Fatma, A. Boob, H. Li, P. Xue, T. A. Martin and H. Zhao | Metabolic Engineering: Methodologies and Applications | Chemical Reviews | 123(9) 5521–70 |
2023 | 10.1111/nph.18734 | Vigneaud, J., A. Kohler, M. D. Sow, A. Delaunay, L. Fauchery, et al. | DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus | New Phytologist | 238(6) 2561–77 |
2023 | 10.1002/bit.28337 | VanArsdale, E., A. Navid, M. J. Chu, T. M. Halvorsen, G. F. Payne, Y. Jiao, W. E. Bentley and M. C. Yung | Electrogenetic signaling and information propagation for controlling microbial consortia via programmed lysis | Biotechnology and Bioengineering | 120(5) 1366–81 |
2023 | 10.1017/S1473550423000058 | Trubl, G., K. M. Stedman, K. F. Bywaters, E. E. Matula, P. Sommers, et al. | Astrovirology: how viruses enhance our understanding of life in the Universe | International Journal of Astrobiology | 1–25 |
2023 | Tibocha-Bonilla, J. D., R. Santibáñez-Palominos and K. Zengler | CoralME - An automated tool for next-generation metabolic model design and optimization | Metabolic Engineering 15 | ||
2023 | 10.3389/fpls.2022.1023571 | Tejera-Nieves, M., M. Abraha, J. Chen, S. K. Hamilton, G. P. Robertson and B. J. Walker | Seasonal decline in leaf photosynthesis in perennial switchgrass explained by sink limitations and water deficit | Frontiers in Plant Science | 13 |
2023 | 10.1021/acssuschemeng.2c06876 | Tan, L., H. L. Scott, M. D. Smith, S. V. Pingali, H. M. O’Neill, J. L. Morrell-Falvey, J. Katsaras, J. C. Smith, B. H. Davison, J. G. Elkins and J. D. Nickels | Amphiphilic Co-Solvents Modulate the Structure of Membrane Domains | ACS Sustainable Chemistry & Engineering | 11(4) 1598–609 |
2023 | 10.1016/j.ces.2022.118406 | Taifan, G. S. P. and C. T. Maravelias | Integrated membrane material design and system synthesis | Chemical Engineering Science | 269 118406 |
2023 | Suzuki, Y. and J. C. Venter | 20 Years of the Minimal Cell’s Rise from Theory to Practice | Keiko SFC Journal | 22(2) 42–53 | |
2023 | Suzuki, Y., A. Murao, J. Sebesta, B. Yang, D. H. Hernandez, et al. | IMAGINE BioSecurity: Genome-Scale Engineering and Modeling for Secure Biosystems Design | DOE Genomic Sciences Program Annual Meeting | ||
2023 | 10.1021/acssuschemeng.2c05199 | Sumer, Z. and R. C. Van Lehn | Heuristic Computational Model for Predicting Lignin Solubility in Tailored Organic Solvents | ACS Sustainable Chemistry & Engineering | 11(1) 187–98 |
2023 | 10.1038/s41396-022-01354-0 | Stone, B. W. G., P. Dijkstra, B. K. Finley, R. Fitzpatrick, M. M. Foley, et al. | Life history strategies among soil bacteria—dichotomy for few, continuum for many | The ISME Journal | 17(4) 611–9 |
2023 | 10.1007/s00442-023-05322-z | Stone, B. W., S. J. Blazewicz, B. J. Koch, P. Dijkstra, M. Hayer, K. S. Hofmockel, X. J. A. Liu, R. L. Mau, J. Pett-Ridge, E. Schwartz and B. A. Hungate | Nutrients strengthen density dependence of per-capita growth and mortality rates in the soil bacterial community | Oecologia | 201(3) 771–82 |
2023 | 10.1021/acs.est.2c07936 | Stewart, D. W., Y. R. Cortés-Peña, Y. Li, A. S. Stillwell, M. Khanna and J. S. Guest | Implications of Biorefinery Policy Incentives and Location-Specific Economic Parameters for the Financial Viability of Biofuels | Environmental Science & Technology | 57(6) 2262–71 |
2023 | 10.1002/ijch.202200083 | Stephens, K. and W. E. Bentley | Quorum Sensing from Two Engineers’ Perspectives | Israel Journal of Chemistry | e202200083 |
2023 | 10.1007/s00438-022-01987-y | Srivastava, S., S. Bombaywala, S. J. Jakhesara, N. V. Patil, C. G. Joshi, H. J. Purohit and N. A. Dafale | Potential of camel rumen derived Bacillus subtilis and Bacillus velezensis strains for application in plant biomass hydrolysis | Molecular Genetics and Genomics | 298(2) 361–74 |
2023 | 10.1007/s10482-022-01801-0 | Sreya, P., G. Suresh, A. Rai, B. Ria, L. Vighnesh, V. C. Agre, U. Jagadeeshwari, C. Sasikala and C. V. Ramana | Revisiting the taxonomy of the genus Rhodopirellula with the proposal for reclassification of the genus to Rhodopirellula sensu stricto, Aporhodopirellula gen. nov., Allorhodopirellula gen. nov. and Neorhodopirellula gen. nov | Antonie van Leeuwenhoek | 116(3) 243–64 |
2023 | 10.1039/D2NP00077F | Sirirungruang, S., C. R. Barnum, S. N. Tang and P. M. Shih | Plant glycosyltransferases for expanding bioactive glycoside diversity | Natural Product Reports | |
2023 | 10.1002/bbb.2427 | Singh, R., S. S. Bhagwat, M. B. Viswanathan, Y. R. Cortés-Peña, K. K. Eilts, G. McDonough, M. Cao, J. S. Guest, H. Zhao and V. Singh | Adsorptive separation and recovery of triacetic acid lactone from fermentation broth | Biofuels, Bioproducts and Biorefining | 17(1) 109–20 |
2023 | 10.1111/gcb.16609 | Silverstein, M. R., D. Segrè and J. M. Bhatnagar | Environmental microbiome engineering for the mitigation of climate change | Global Change Biology | 29(8) 2050–66 |
2023 | 10.3390/cells12071082 | Shrestha, H., T. Yao, Z. Qiao, W. Muchero, R. L. Hettich, J.-G. Chen and P. E. Abraham | Lectin Receptor-like Kinase Signaling during Engineered Ectomycorrhiza Colonization | Cells | 12(7) 1082 |
2023 | 10.1128/aem.00406-23 | Sharma, B. D., D. G. Olson, R. J. Giannone, R. L. Hettich and L. R. Lynd | Characterization and Amelioration of Filtration Difficulties Encountered in Metabolomic Studies of Clostridium thermocellum at Elevated Sugar Concentrations | Applied and Environmental Microbiology | 89(4) e00406-23 |
2023 | 10.1016/j.mib.2022.102263 | Shade, A. | Microbiome rescue: directing resilience of environmental microbial communities | Current Opinion in Microbiology | 72 102263 |
2023 | 10.1016/j.scitotenv.2022.159496 | Semedo, M. and B. Song | Sediment metagenomics reveals the impacts of poultry industry wastewater on antibiotic resistance and nitrogen cycling genes in tidal creek ecosystems | Science of The Total Environment | 857(Part 2) 159496 |
2023 | Sebesta, J., C. Pastore, H. Hou and J. Yu | Biocontainment of genetically modified Synechocystis sp. PCC 6803 | The 2023 Alabama State University STEM Research Symposium | ||
2023 | Sebesta, J., M. Cantrell, E. Schaedig, H. Hou, C. Pastore, K. Chou, W. Xiong, M. Guarnieri and J. Yu | Polyphosphate kinase deletion in Synechocystis sp. PCC6803 increases productivity in controlled conditions but decreases tolerance to a variety of stress conditions | Gorden Conference Photosynthesis | ||
2023 | 10.1016/j.ymben.2023.04.003 | Schroeder, W. L., T. Kuil, A. J. A. van Maris, D. G. Olson, L. R. Lynd and C. D. Maranas | A detailed genome-scale metabolic model of Clostridium thermocellum investigates sources of pyrophosphate for driving glycolysis | Metabolic Engineering | 77 306–22 |
2023 | 10.3389/fmicb.2023.1219318 | Schaedig, E., M. Cantrell, C. Urban, X. Zhao, D. Greene, J. Dancer, M. Gross, J. Sebesta, K. J. Chou, J. Grabowy, M. Gross, K. Kumar and J. Yu | Isolation of phosphorus-hyperaccumulating microalgae from revolving algal biofilm (RAB) wastewater treatment systems | Frontiers in Microbiology | 14 |
2023 | 10.1007/s10482-022-01804-x | Saticioglu, I. B., H. Ay, S. Altun, E. Karakaya, E. S. Gunduz, D. Aydogdu, D. Yarim, N. Erkek and M. Duman | Genomic insight into Myroides oncorhynchi sp. nov., a new member of the Myroides genus, isolated from the internal organ of rainbow trout (Oncorhynchus mykiss) | Antonie van Leeuwenhoek | 116(3) 291–302 |
2023 | 10.1128/jb.00338-22 | Riley, L. A., I. C. Payne, M. Tumen-Velasquez and A. M. Guss | Simple and Rapid Site-Specific Integration of Multiple Heterologous DNAs into the Escherichia coli Chromosome | Journal of Bacteriology | 205(2) e00338-22 |
2023 | 10.1016/j.jaridenv.2022.104876 | Reeve, S., B. Palmer, P. Cobb, N. Pietrasiak and D. A. Lipson | Facilitating restoration of degraded biological soil crusts using mixed culture inoculation | Journal of Arid Environments | 208 104876 |
2023 | 10.1038/s41559-022-01936-3 | Price, M. | Erroneous predictions of auxotrophies by CarveMe | Nature Ecology & Evolution | 7(2) 194–95 |
2023 | 10.1038/s41477-023-01358-4 | Prabhakar, P. K., J. H. Pereira, R. Taujale, W. Shao, V. S. Bharadwaj, D. Chapla, J.-Y. Yang, Y. J. Bomble, K. W. Moremen, N. Kannan, M. Hammel, P. D. Adams, H. V. Scheller and B. R. Urbanowicz | Structural and biochemical insight into a modular _-1,4-galactan synthase in plants | Nature Plants | 9(3) 486–500 |
2023 | 10.1016/j.copbio.2022.102869 | Ploessl, D., Y. Zhao and Z. Shao | Engineering of non-model eukaryotes for bioenergy and biochemical production | Current Opinion in Biotechnology | 79 102869 |
2023 | 10.1016/j.copbio.2023.102913 | Pfleger, B. F. and R. Takors | Recent progress in the synthesis of advanced biofuel and bioproducts | Current Opinion in Biotechnology | 80 102913 |
2023 | Pastore, C. | Evaluating the inability to store polyphosphate as a biocontainment strategy in genetically modified microalgae | DOE Office of Science’s Science Undergraduate Laboratory Internship Program Final Report | ||
2023 | 10.1111/1462-2920.16296 | Park, M.-R., R. Gauttam, B. Fong, Y. Chen, H. G. Lim, A. M. Feist, A. Mukhopadhyay, C. J. Petzold, B. A. Simmons and S. W. Singer | Revealing oxidative pentose metabolism in new Pseudomonas putida isolates | Environmental Microbiology | 25(2) 493–504 |
2023 | 10.1038/s41467-023-39010-6 | Pang, C., J. Chai, P. Zhu, J. Shanklin and Q. Liu | Structural mechanism of intracellular autoregulation of zinc uptake in ZIP transporters | Nature Communications | 14(1) 3404 |
2023 | 10.1007/s00248-022-02137-y | Palmer, B., D. Lawson and D. A. Lipson | Years After a Fire, Biocrust Microbial Communities are Similar to Unburned Communities in a Coastal Grassland | Microbial Ecology | 85(3) 1028–44 |
2023 | 10.1111/nph.18624 | Ortega, M. A., R. Zhou, M. S. S. Chen, W. P. Bewg, B. Simon and C.-J. Tsai | In vitro floral development in poplar: insights into seed trichome regulation and trimonoecy | New Phytologist | 237(4) 1078–81 |
2023 | 10.1128/mra.00359-22 | O’Toole, P., R. A. Daly, R. K. Afshar, M. Shaffer, K. C. Wrighton and B. B. McGivern | Draft Metagenome-Assembled Genome Sequence of a Novel Citricoccus Species from Agricultural Soil in Western Colorado | Microbiology Resource Announcements | 12(1) e00359-22 |
2023 | 10.1093/plphys/kiac580 | O’Leary, B. M., A. P. Scafaro and L. M. York | High-throughput, dynamic, multi-dimensional: an expanding repertoire of plant respiration measurements | Plant Physiology | 191(4) 2070–83 |
2023 | 10.3389/frmbi.2023.1078024 | Naylor, D., K. Naasko, M. Smith, S. Couvillion, C. Nicora, J. Trejo, S. Fransen, R. Danczak, R. McClure, K. S. Hofmockel and J. K. Jansson | Interactive effects of depth and differential irrigation on soil microbiome composition and functioning | Frontiers in Microbiomes | 2 |
2023 | 10.1111/nph.18518 | Mottiar, Y., R. A. Smith, S. D. Karlen, J. Ralph and S. D. Mansfield | Evolution of p-coumaroylated lignin in eudicots provides new tools for cell wall engineering | New Phytologist | 237(1) 251–64 |
2023 | 10.1111/pbi.13935 | Mottiar, Y., S. D. Karlen, R. E. Goacher, J. Ralph and S. D. Mansfield | Metabolic engineering of p-hydroxybenzoate in poplar lignin | Plant Biotechnology Journal | 21(1) 176–88 |
2023 | 10.1021/acssuschemeng.3c00624 | Mohan, M., M. D. Smith, O. N. Demerdash, B. A. Simmons, S. Singh, M. K. Kidder and J. C. Smith | Quantum Chemistry-Driven Machine Learning Approach for the Prediction of the Surface Tension and Speed of Sound in Ionic Liquids | ACS Sustainable Chemistry & Engineering | 11(20) 7809–21 |
2023 | 10.1038/s41598-022-25372-2 | Mohan, M., B. A. Simmons, K. L. Sale and S. Singh | Multiscale molecular simulations for the solvation of lignin in ionic liquids | Scientific Reports | 13(1) 271 |
2023 | 10.1039/D2GC04425K | Mohan, M., O. Demerdash, B. A. Simmons, J. C. Smith, M. K. Kidder and S. Singh | Accurate prediction of carbon dioxide capture by deep eutectic solvents using quantum chemistry and a neural network | Green Chemistry | 25(9) 3475–92 |
2023 | 10.1094/pbiomes-08-22-0046-fi | Mechan, M., J. Mullet and A. Shade | Phyllosphere exudates select for distinct microbiome members in sorghum epicuticular wax and aerial root mucilage | Phytobiomes Journal | |
2023 | 10.1016/j.ymben.2023.02.006 | McNaught, K. J., E. Kuatsjah, M. Zahn, É. T. Prates, H. Shao, et al. | Initiation of fatty acid biosynthesis in Pseudomonas putida KT2440 | Metabolic Engineering | 76 193–203 |
2023 | 10.1038/s41467-023-37164-x | McLaughlin, S., K. Zhalnina, S. Kosina, T. R. Northen and J. Sasse | The core metabolome and root exudation dynamics of three phylogenetically distinct plant species | Nature Communications | 14(1) 1649 |
2023 | 10.1002/eap.2784 | McDaniel, M. D., J. A. Bird, J. Pett-Ridge, E. Marin-Spiotta, T. M. Schmidt and A. S. Grandy | Diversifying and perennializing plants in agroecosystems alters retention of new C and N from crop residues | Ecological Applications | 33(2) e2784 |
2023 | 10.3389/fmicb.2022.1046661 | McClure, R., M. Garcia, S. Couvillion, Y. Farris and K. S. Hofmockel | Removal of primary nutrient degraders reduces growth of soil microbial communities with genomic redundancy | Frontiers in Microbiology | 13 |
2023 | 10.1002/tpg2.20298 | May, D., K. Paldi and F. Altpeter | Targeted mutagenesis with sequence-specific nucleases for accelerated improvement of polyploid crops: Progress, challenges, and prospects | The Plant Genome | e20298 |
2023 | 10.1016/j.copbio.2022.102881 | Martin, H. G., T. Radivojevic, J. Zucker, K. Bouchard, J. Sustarich, et al. | Perspectives for self-driving labs in synthetic biology | Current Opinion in Biotechnology | 79 102881 |
2023 | 10.1016/j.scitotenv.2022.158863 | Loiola, M., A. E. T. Silva, M. Krull, F. A. Barbosa, E. H. Galvão, V. F. Patire, I. C. S. Cruz, F. Barros, V. Hatje and P. M. Meirelles | Mangrove microbial community recovery and their role in early stages of forest recolonization within shrimp ponds | Science of The Total Environment | 855 158863 |
2023 | 10.1093/plphys/kiad076 | Liu, Y., G. Yuan, B. Hyden, G. A. Tuskan, P. E. Abraham and X. Yang | Expanding the application of anti-CRISPR proteins in plants for tunable genome editing | Plant Physiology | 192(1) 60–4 |
2023 | 10.1039/D3RA01546G | Li, Y., X. Meng, R. Meng, T. Cai, Y. Pu, Z.-M. Zhao and A. J. Ragauskas | Valorization of homogeneous linear catechyl lignin: opportunities and challenges | RSC Advances | 13(19) 12750–9 |
2023 | 10.1021/acssuschemeng.2c07139 | Li, Y., G. A. Kontos, D. V. Cabrera, N. M. Avila, T. W. Parkinson, M. B. Viswanathan, V. Singh, F. Altpeter, R. A. Labatut and J. S. Guest | Design of a High-Rate Wastewater Treatment Process for Energy and Water Recovery at Biorefineries | ACS Sustainable Chemistry & Engineering | 11(9) 3861–72 |
2023 | 10.1038/s41467-023-38096-2 | Li, M., T. Yao, W. Lin, W. E. Hinckley, M. Galli, W. Muchero, A. Gallavotti, J.-G. Chen and S.-s. C. Huang | Double DAP-seq uncovered synergistic DNA binding of interacting bZIP transcription factors | Nature Communications | 14(1) 2600 |
2023 | 10.1016/j.xplc.2023.100594 | Li, C., W. Huang, X. Han, G. Zhao, W. Zhang, et al. | Diel dynamics of multi-omics in elkhorn fern provide new insights into weak CAM photosynthesis | Plant Communications | 100594 |
2023 | 10.1016/j.cej.2022.138886 | Lee, J. W., S. S. Bhagwat, N. Kuanyshev, Y. B. Cho, L. Sun, Y.-G. Lee, Y. R. Cortés-Peña, Y. Li, C. V. Rao, J. S. Guest and Y.-S. Jin | Rewiring yeast metabolism for producing 2,3-butanediol and two downstream applications: Techno-economic analysis and life cycle assessment of methyl ethyl ketone (MEK) and agricultural biostimulant production | Chemical Engineering Journal | 451 138886 |
2023 | 10.1002/biot.202200535 | Lane, S., T. L. Turner and Y.-S. Jin | Glucose assimilation rate determines the partition of flux at pyruvate between lactic acid and ethanol in Saccharomyces cerevisiae | Biotechnology Journal | 18(4) 2200535 |
2023 | 10.1007/978-1-0716-2784-6_27 | Ko, D. K. and F. Brandizzi | Coexpression Network Construction and Visualization from Transcriptomes Underlying ER Stress Responses | Plant Proteostasis: Methods and Protocols | 2581 385–401 |
2023 | 10.1186/s13068-023-02291-6 | Kim, S.-K., Y. J. Bomble and J. Westpheling | Simultaneous expression of an endogenous spermidine synthase and a butanol dehydrogenase from Thermoanaerobacter pseudethanolicus in Clostridium thermocellum results in increased resistance to acetic acid and furans, increased ethanol production and an increase in thermotolerance | Biotechnology for Biofuels and Bioproducts | 16(1) 46 |
2023 | 10.1007/978-1-0716-2639-9_4 | Kim, S.-J. and F. Brandizzi | Microscopy and Immunocytochemistry-Based Methods to Study Cell Wall Biosynthetic Enzymes in the Golgi | Golgi: Methods and Protocols | 2557 39–51 |
2023 | 10.1111/gcbb.13024 | Kim, S., B. E. Dale, R. Martinez-Feria, B. Basso, K. Thelen, C. T. Maravelias, D. Landis, T. J. Lark and G. P. Robertson | Global warming intensity of biofuel derived from switchgrass grown on marginal land in Michigan | GCB Bioenergy | 15(3) 319–31 |
2023 | 10.1021/acssuschemeng.3c00115 | Kenny, J. K., J. W. Medlin and G. T. Beckham | Quantification of Phenolic Hydroxyl Groups in Lignin via 19F NMR Spectroscopy | ACS Sustainable Chemistry & Engineering | 11(14) 5644–55 |
2023 | 10.1038/s41564-023-01361-7 | Kelliher, J. M., M. Rudolph, P. Vangay, A. Abbas, M. A. Borton, et al. | Cohort-based learning for microbiome research community standards | Nature Microbiology | 8(5) 751–3 |
2023 | 10.1016/j.mtbio.2023.100560 | Jo, C., J. Zhang, J. M. Tam, G. M. Church, A. S. Khalil, D. Segrè and T.-C. Tang | Unlocking the magic in mycelium: Using synthetic biology to optimize filamentous fungi for biomanufacturing and sustainability | Materials Today Bio | 19 100560 |
2023 | 10.1128/msystems.00017-21 | Jo, C., D. B. Bernstein, N. Vaisman, H. M. Frydman and D. Segrè | Construction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial Interactions | mSystems | 8(2) e00017-21 |
2023 | 10.1016/j.ymben.2023.02.012 | Jindra, M. A., K. Choe, R. Chowdhury, R. Kong, S. Ghaffari, J. V. Sweedler and B. F. Pfleger | Evaluation of strategies to narrow the product chain-length distribution of microbially synthesized free fatty acids | Metabolic Engineering | 77 21–31 |
2023 | 10.1016/j.biortech.2023.128630 | Jia, Y., S. Maitra and V. Singh | Chemical-free production of multiple high-value bioproducts from metabolically engineered transgenic sugarcane ‘oilcane’ bagasse and their recovery using nanofiltration | Bioresource Technology | 371 128630 |
2023 | 10.1038/s41579-022-00811-z | Jansson, J. K. and R. Wu | Soil viral diversity, ecology and climate change | Nature Reviews Microbiology | 21(5) 296–311 |
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