Genomic Science Program
U.S. Department of Energy | Office of Science | Biological and Environmental Research Program

Research Publications

This bibliography contains publications from research funded by the Genomic Science Program. Most publications are from FY 2021 and beyond, though older publications appear in some cases. If you are a GSP-funded researcher and don’t see your publications listed below, contact Marissa Mills ( to get your publications added.


202310.1002/anie.202212440Zhou, Y., E. N. Mirts, S. Yook, M. Waugh, R. Martini, Y.-S. Jin and Y. LuReshaping the 2-Pyrone Synthase Active Site for Chemoselective Biosynthesis of PolyketidesAngewandte Chemie International Edition62(5) e202212440
202310.1021/acs.analchem.2c04845Zhou, S., Z. Fatma, P. Xue, S. Mishra, M. Cao, H. Zhao and J. V. SweedlerMass Spectrometry-Based High-Throughput Quantification of Bioproducts in Liquid CultureAnalytical Chemistry95(8) 4067–76
202310.1016/j.ijbiomac.2023.124743Zhou, F., H. Wu, Y. Chen, M. Wang, G. A. Tuskan and T. YinFunction and molecular mechanism of a poplar placenta limited MIXTA gene in regulating differentiation of plant epidermal cellsInternational Journal of Biological Macromolecules242 124743
202310.1111/gcbb.13021Zhang, N., B. P. Sharma and M. KhannaDetermining spatially varying profit-maximizing management practices for miscanthus and switchgrass production in the rainfed United StatesGCB Bioenergy15(3) 271–82
202310.1016/j.copbio.2022.102870Zha, J., Z. Zhao, Z. Xiao, T. Eng, A. Mukhopadhyay, M. A. G. Koffas and Y. J. TangBiosystem design of Corynebacterium glutamicum for bioproductionCurrent Opinion in Biotechnology79 102870
202310.3390/plants12081657Yuan, G., Y. Liu, T. Yao, W. Muchero, J.-G. Chen, G. A. Tuskan and X. YangeYGFPuv-Assisted Transgenic Selection in Populus deltoides WV94 and Multiplex Genome Editing in Protoplasts of P. trichocarpa x P. deltoides Clone ’52-225’Plants12(8) 1657
202310.1128/aem.01753-22Yayo, J., T. Rydzak, T. Kuil, A. Karlsson, D. J. Harding, A. M. Guss and A. J. A. v. MarisThe Roles of Nicotinamide Adenine Dinucleotide Phosphate Reoxidation and Ammonium Assimilation in the Secretion of Amino Acids as Byproducts of Clostridium thermocellumApplied and Environmental Microbiology89(1) e01753-22
202310.1093/hr/uhad085Yao, T., G. Yuan, H. Lu, Y. Liu, J. Zhang, G. A. Tuskan, W. Muchero, J.-G. Chen and X. YangCRISPR/Cas9-based gene activation and base editing in PopulusHorticulture Researchuhad085
202310.1186/s13068-023-02302-6Yang, J., T. Sooksa-nguan, B. Kannan, S. Cano-Alfanar, H. Liu, A. Kent, J. Shanklin, F. Altpeter and A. HoweMicrobiome differences in sugarcane and metabolically engineered oilcane accessions and their implications for bioenergy productionBiotechnology for Biofuels and Bioproducts16(1) 56
202310.1016/j.ymben.2023.01.003Yan, Q., T. B. Jacobson, Z. Ye, Y. R. Cortés-Pena, S. S. Bhagwat, S. Hubbard, W. T. Cordell, R. E. Oleniczak, F. V. Gambacorta, J. R. Vazquez, E. V. Shusta, D. Amador-Noguez, J. S. Guest and B. F. PflegerEvaluation of 1,2-diacyl-3-acetyl triacylglycerol production in Yarrowia lipolyticaMetabolic Engineering76 18–28
2023US11629356B2Xie, M., W. Muchero, J.-G. Chen and G. A. TuskanRegulating lignin biosynthesis and sugar release in plantsUnited States PatentUT Battelle LLC
202310.1016/j.mec.2023.e00220Wu, Z.-Y., W. Sun, Y. Shen, J. Pratas, P. F. Suthers, P.-H. Hsieh, S. Dwaraknath, J. D. Rabinowitz, C. D. Maranas, Z. Shao and Y. YoshikuniMetabolic engineering of low-pH-tolerant non-model yeast, Issatchenkia orientalis, for production of citramalateMetabolic Engineering Communications16 e00220
202310.1128/aem.00500-23Wu, X., S. Gushgari-Doyle, L. M. Lui, A. J. Hendrickson, Y. Liu, S. Jagadamma, T. N. Nielsen, N. B. Justice, T. Simmons, N. J. Hess, D. C. Joyner, T. C. Hazen, A. P. Arkin and R. ChakrabortyDistinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical ZoneApplied and Environmental Microbiologye00500-23
202310.1016/j.engmic.2023.100074Wei, H., W. Wang, Y.-C. Chou, M. E. Himmel, X. Chen, Y. J. Bomble and M. ZhangProspects for engineering Ralstonia eutropha and Zymomonas mobilis for the autotrophic production of 2,3-butanediol from CO2 and H2Engineering Microbiology3(2) 100074
202310.1021/acs.est.2c06674Wang, Y., N. R. Baral, M. Yang and C. D. ScownCo-Processing Agricultural Residues and Wet Organic Waste Can Produce Lower-Cost Carbon-Negative Fuels and BioplasticsEnvironmental Science & Technology57(7) 2958–69
202310.1016/j.biortech.2022.128216Walls, L. E., P. Otoupal, R. Ledesma-Amaro, S. B. Velasquez-Orta, J. M. Gladden and L. Rios-SolisBioconversion of cellulose into bisabolene using Ruminococcus flavefaciens and Rhodosporidium toruloidesBioresource Technology368 128216
202310.1021/acs.chemrev.2c00403Volk, M. J., V. G. Tran, S.-I. Tan, S. Mishra, Z. Fatma, A. Boob, H. Li, P. Xue, T. A. Martin and H. ZhaoMetabolic Engineering: Methodologies and ApplicationsChemical Reviews123(9) 5521–70
202310.1111/nph.18734Vigneaud, J., A. Kohler, M. D. Sow, A. Delaunay, L. Fauchery, et al.DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungusNew Phytologist238(6) 2561–77
202310.1002/bit.28337VanArsdale, E., A. Navid, M. J. Chu, T. M. Halvorsen, G. F. Payne, Y. Jiao, W. E. Bentley and M. C. YungElectrogenetic signaling and information propagation for controlling microbial consortia via programmed lysisBiotechnology and Bioengineering120(5) 1366–81
202310.1017/S1473550423000058Trubl, G., K. M. Stedman, K. F. Bywaters, E. E. Matula, P. Sommers, et al.Astrovirology: how viruses enhance our understanding of life in the UniverseInternational Journal of Astrobiology1–25
2023Tibocha-Bonilla, J. D., R. Santibáñez-Palominos and K. ZenglerCoralME - An automated tool for next-generation metabolic model design and optimizationMetabolic Engineering 15
202310.3389/fpls.2022.1023571Tejera-Nieves, M., M. Abraha, J. Chen, S. K. Hamilton, G. P. Robertson and B. J. WalkerSeasonal decline in leaf photosynthesis in perennial switchgrass explained by sink limitations and water deficitFrontiers in Plant Science13
202310.1021/acssuschemeng.2c06876Tan, L., H. L. Scott, M. D. Smith, S. V. Pingali, H. M. O’Neill, J. L. Morrell-Falvey, J. Katsaras, J. C. Smith, B. H. Davison, J. G. Elkins and J. D. NickelsAmphiphilic Co-Solvents Modulate the Structure of Membrane DomainsACS Sustainable Chemistry & Engineering11(4) 1598–609
202310.1016/j.ces.2022.118406Taifan, G. S. P. and C. T. MaraveliasIntegrated membrane material design and system synthesisChemical Engineering Science269 118406
2023Suzuki, Y. and J. C. Venter20 Years of the Minimal Cell’s Rise from Theory to PracticeKeiko SFC Journal22(2) 42–53
2023Suzuki, Y., A. Murao, J. Sebesta, B. Yang, D. H. Hernandez, et al.IMAGINE BioSecurity: Genome-Scale Engineering and Modeling for Secure Biosystems DesignDOE Genomic Sciences Program Annual Meeting
202310.1021/acssuschemeng.2c05199Sumer, Z. and R. C. Van LehnHeuristic Computational Model for Predicting Lignin Solubility in Tailored Organic SolventsACS Sustainable Chemistry & Engineering11(1) 187–98
202310.1038/s41396-022-01354-0Stone, B. W. G., P. Dijkstra, B. K. Finley, R. Fitzpatrick, M. M. Foley, et al.Life history strategies among soil bacteria—dichotomy for few, continuum for manyThe ISME Journal17(4) 611–9
202310.1007/s00442-023-05322-zStone, B. W., S. J. Blazewicz, B. J. Koch, P. Dijkstra, M. Hayer, K. S. Hofmockel, X. J. A. Liu, R. L. Mau, J. Pett-Ridge, E. Schwartz and B. A. HungateNutrients strengthen density dependence of per-capita growth and mortality rates in the soil bacterial communityOecologia201(3) 771–82
202310.1021/acs.est.2c07936Stewart, D. W., Y. R. Cortés-Peña, Y. Li, A. S. Stillwell, M. Khanna and J. S. GuestImplications of Biorefinery Policy Incentives and Location-Specific Economic Parameters for the Financial Viability of BiofuelsEnvironmental Science & Technology57(6) 2262–71
202310.1002/ijch.202200083Stephens, K. and W. E. BentleyQuorum Sensing from Two Engineers’ PerspectivesIsrael Journal of Chemistrye202200083
202310.1007/s00438-022-01987-ySrivastava, S., S. Bombaywala, S. J. Jakhesara, N. V. Patil, C. G. Joshi, H. J. Purohit and N. A. DafalePotential of camel rumen derived Bacillus subtilis and Bacillus velezensis strains for application in plant biomass hydrolysisMolecular Genetics and Genomics298(2) 361–74
202310.1007/s10482-022-01801-0Sreya, P., G. Suresh, A. Rai, B. Ria, L. Vighnesh, V. C. Agre, U. Jagadeeshwari, C. Sasikala and C. V. RamanaRevisiting the taxonomy of the genus Rhodopirellula with the proposal for reclassification of the genus to Rhodopirellula sensu stricto, Aporhodopirellula gen. nov., Allorhodopirellula gen. nov. and Neorhodopirellula gen. novAntonie van Leeuwenhoek116(3) 243–64
202310.1039/D2NP00077FSirirungruang, S., C. R. Barnum, S. N. Tang and P. M. ShihPlant glycosyltransferases for expanding bioactive glycoside diversityNatural Product Reports
202310.1002/bbb.2427Singh, R., S. S. Bhagwat, M. B. Viswanathan, Y. R. Cortés-Peña, K. K. Eilts, G. McDonough, M. Cao, J. S. Guest, H. Zhao and V. SinghAdsorptive separation and recovery of triacetic acid lactone from fermentation brothBiofuels, Bioproducts and Biorefining17(1) 109–20
202310.1111/gcb.16609Silverstein, M. R., D. Segrè and J. M. BhatnagarEnvironmental microbiome engineering for the mitigation of climate changeGlobal Change Biology29(8) 2050–66
202310.3390/cells12071082Shrestha, H., T. Yao, Z. Qiao, W. Muchero, R. L. Hettich, J.-G. Chen and P. E. AbrahamLectin Receptor-like Kinase Signaling during Engineered Ectomycorrhiza ColonizationCells12(7) 1082
202310.1128/aem.00406-23Sharma, B. D., D. G. Olson, R. J. Giannone, R. L. Hettich and L. R. LyndCharacterization and Amelioration of Filtration Difficulties Encountered in Metabolomic Studies of Clostridium thermocellum at Elevated Sugar ConcentrationsApplied and Environmental Microbiology89(4) e00406-23
202310.1016/j.mib.2022.102263Shade, A.Microbiome rescue: directing resilience of environmental microbial communitiesCurrent Opinion in Microbiology72 102263
202310.1016/j.scitotenv.2022.159496Semedo, M. and B. SongSediment metagenomics reveals the impacts of poultry industry wastewater on antibiotic resistance and nitrogen cycling genes in tidal creek ecosystemsScience of The Total Environment857(Part 2) 159496
2023Sebesta, J., C. Pastore, H. Hou and J. YuBiocontainment of genetically modified Synechocystis sp. PCC 6803The 2023 Alabama State University STEM Research Symposium
2023Sebesta, J., M. Cantrell, E. Schaedig, H. Hou, C. Pastore, K. Chou, W. Xiong, M. Guarnieri and J. YuPolyphosphate kinase deletion in Synechocystis sp. PCC6803 increases productivity in controlled conditions but decreases tolerance to a variety of stress conditionsGorden Conference Photosynthesis
202310.1016/j.ymben.2023.04.003Schroeder, W. L., T. Kuil, A. J. A. van Maris, D. G. Olson, L. R. Lynd and C. D. MaranasA detailed genome-scale metabolic model of Clostridium thermocellum investigates sources of pyrophosphate for driving glycolysisMetabolic Engineering77 306–22
202310.3389/fmicb.2023.1219318Schaedig, E., M. Cantrell, C. Urban, X. Zhao, D. Greene, J. Dancer, M. Gross, J. Sebesta, K. J. Chou, J. Grabowy, M. Gross, K. Kumar and J. YuIsolation of phosphorus-hyperaccumulating microalgae from revolving algal biofilm (RAB) wastewater treatment systemsFrontiers in Microbiology14
202310.1007/s10482-022-01804-xSaticioglu, I. B., H. Ay, S. Altun, E. Karakaya, E. S. Gunduz, D. Aydogdu, D. Yarim, N. Erkek and M. DumanGenomic insight into Myroides oncorhynchi sp. nov., a new member of the Myroides genus, isolated from the internal organ of rainbow trout (Oncorhynchus mykiss)Antonie van Leeuwenhoek116(3) 291–302
202310.1128/jb.00338-22Riley, L. A., I. C. Payne, M. Tumen-Velasquez and A. M. GussSimple and Rapid Site-Specific Integration of Multiple Heterologous DNAs into the Escherichia coli ChromosomeJournal of Bacteriology205(2) e00338-22
202310.1016/j.jaridenv.2022.104876Reeve, S., B. Palmer, P. Cobb, N. Pietrasiak and D. A. LipsonFacilitating restoration of degraded biological soil crusts using mixed culture inoculationJournal of Arid Environments208 104876
202310.1038/s41559-022-01936-3Price, M.Erroneous predictions of auxotrophies by CarveMeNature Ecology & Evolution7(2) 194–95
202310.1038/s41477-023-01358-4Prabhakar, P. K., J. H. Pereira, R. Taujale, W. Shao, V. S. Bharadwaj, D. Chapla, J.-Y. Yang, Y. J. Bomble, K. W. Moremen, N. Kannan, M. Hammel, P. D. Adams, H. V. Scheller and B. R. UrbanowiczStructural and biochemical insight into a modular _-1,4-galactan synthase in plantsNature Plants9(3) 486–500
202310.1016/j.copbio.2022.102869Ploessl, D., Y. Zhao and Z. ShaoEngineering of non-model eukaryotes for bioenergy and biochemical productionCurrent Opinion in Biotechnology79 102869
202310.1016/j.copbio.2023.102913Pfleger, B. F. and R. TakorsRecent progress in the synthesis of advanced biofuel and bioproductsCurrent Opinion in Biotechnology80 102913
2023Pastore, C.Evaluating the inability to store polyphosphate as a biocontainment strategy in genetically modified microalgaeDOE Office of Science’s Science Undergraduate Laboratory Internship Program Final Report
202310.1111/1462-2920.16296Park, M.-R., R. Gauttam, B. Fong, Y. Chen, H. G. Lim, A. M. Feist, A. Mukhopadhyay, C. J. Petzold, B. A. Simmons and S. W. SingerRevealing oxidative pentose metabolism in new Pseudomonas putida isolatesEnvironmental Microbiology25(2) 493–504
202310.1038/s41467-023-39010-6Pang, C., J. Chai, P. Zhu, J. Shanklin and Q. LiuStructural mechanism of intracellular autoregulation of zinc uptake in ZIP transportersNature Communications14(1) 3404
202310.1007/s00248-022-02137-yPalmer, B., D. Lawson and D. A. LipsonYears After a Fire, Biocrust Microbial Communities are Similar to Unburned Communities in a Coastal GrasslandMicrobial Ecology85(3) 1028–44
202310.1111/nph.18624Ortega, M. A., R. Zhou, M. S. S. Chen, W. P. Bewg, B. Simon and C.-J. TsaiIn vitro floral development in poplar: insights into seed trichome regulation and trimonoecyNew Phytologist237(4) 1078–81
202310.1128/mra.00359-22O’Toole, P., R. A. Daly, R. K. Afshar, M. Shaffer, K. C. Wrighton and B. B. McGivernDraft Metagenome-Assembled Genome Sequence of a Novel Citricoccus Species from Agricultural Soil in Western ColoradoMicrobiology Resource Announcements12(1) e00359-22
202310.1093/plphys/kiac580O’Leary, B. M., A. P. Scafaro and L. M. YorkHigh-throughput, dynamic, multi-dimensional: an expanding repertoire of plant respiration measurementsPlant Physiology191(4) 2070–83
202310.3389/frmbi.2023.1078024Naylor, D., K. Naasko, M. Smith, S. Couvillion, C. Nicora, J. Trejo, S. Fransen, R. Danczak, R. McClure, K. S. Hofmockel and J. K. JanssonInteractive effects of depth and differential irrigation on soil microbiome composition and functioningFrontiers in Microbiomes2
202310.1111/nph.18518Mottiar, Y., R. A. Smith, S. D. Karlen, J. Ralph and S. D. MansfieldEvolution of p-coumaroylated lignin in eudicots provides new tools for cell wall engineeringNew Phytologist237(1) 251–64
202310.1111/pbi.13935Mottiar, Y., S. D. Karlen, R. E. Goacher, J. Ralph and S. D. MansfieldMetabolic engineering of p-hydroxybenzoate in poplar ligninPlant Biotechnology Journal21(1) 176–88
202310.1021/acssuschemeng.3c00624Mohan, M., M. D. Smith, O. N. Demerdash, B. A. Simmons, S. Singh, M. K. Kidder and J. C. SmithQuantum Chemistry-Driven Machine Learning Approach for the Prediction of the Surface Tension and Speed of Sound in Ionic LiquidsACS Sustainable Chemistry & Engineering11(20) 7809–21
202310.1038/s41598-022-25372-2Mohan, M., B. A. Simmons, K. L. Sale and S. SinghMultiscale molecular simulations for the solvation of lignin in ionic liquidsScientific Reports13(1) 271
202310.1039/D2GC04425KMohan, M., O. Demerdash, B. A. Simmons, J. C. Smith, M. K. Kidder and S. SinghAccurate prediction of carbon dioxide capture by deep eutectic solvents using quantum chemistry and a neural networkGreen Chemistry25(9) 3475–92
202310.1094/pbiomes-08-22-0046-fiMechan, M., J. Mullet and A. ShadePhyllosphere exudates select for distinct microbiome members in sorghum epicuticular wax and aerial root mucilagePhytobiomes Journal
202310.1016/j.ymben.2023.02.006McNaught, K. J., E. Kuatsjah, M. Zahn, É. T. Prates, H. Shao, et al.Initiation of fatty acid biosynthesis in Pseudomonas putida KT2440Metabolic Engineering76 193–203
202310.1038/s41467-023-37164-xMcLaughlin, S., K. Zhalnina, S. Kosina, T. R. Northen and J. SasseThe core metabolome and root exudation dynamics of three phylogenetically distinct plant speciesNature Communications14(1) 1649
202310.1002/eap.2784McDaniel, M. D., J. A. Bird, J. Pett-Ridge, E. Marin-Spiotta, T. M. Schmidt and A. S. GrandyDiversifying and perennializing plants in agroecosystems alters retention of new C and N from crop residuesEcological Applications33(2) e2784
202310.3389/fmicb.2022.1046661McClure, R., M. Garcia, S. Couvillion, Y. Farris and K. S. HofmockelRemoval of primary nutrient degraders reduces growth of soil microbial communities with genomic redundancyFrontiers in Microbiology13
202310.1002/tpg2.20298May, D., K. Paldi and F. AltpeterTargeted mutagenesis with sequence-specific nucleases for accelerated improvement of polyploid crops: Progress, challenges, and prospectsThe Plant Genomee20298
202310.1016/j.copbio.2022.102881Martin, H. G., T. Radivojevic, J. Zucker, K. Bouchard, J. Sustarich, et al.Perspectives for self-driving labs in synthetic biologyCurrent Opinion in Biotechnology79 102881
202310.1016/j.scitotenv.2022.158863Loiola, M., A. E. T. Silva, M. Krull, F. A. Barbosa, E. H. Galvão, V. F. Patire, I. C. S. Cruz, F. Barros, V. Hatje and P. M. MeirellesMangrove microbial community recovery and their role in early stages of forest recolonization within shrimp pondsScience of The Total Environment855 158863
202310.1093/plphys/kiad076Liu, Y., G. Yuan, B. Hyden, G. A. Tuskan, P. E. Abraham and X. YangExpanding the application of anti-CRISPR proteins in plants for tunable genome editingPlant Physiology192(1) 60–4
202310.1039/D3RA01546GLi, Y., X. Meng, R. Meng, T. Cai, Y. Pu, Z.-M. Zhao and A. J. RagauskasValorization of homogeneous linear catechyl lignin: opportunities and challengesRSC Advances13(19) 12750–9
202310.1021/acssuschemeng.2c07139Li, Y., G. A. Kontos, D. V. Cabrera, N. M. Avila, T. W. Parkinson, M. B. Viswanathan, V. Singh, F. Altpeter, R. A. Labatut and J. S. GuestDesign of a High-Rate Wastewater Treatment Process for Energy and Water Recovery at BiorefineriesACS Sustainable Chemistry & Engineering11(9) 3861–72
202310.1038/s41467-023-38096-2Li, M., T. Yao, W. Lin, W. E. Hinckley, M. Galli, W. Muchero, A. Gallavotti, J.-G. Chen and S.-s. C. HuangDouble DAP-seq uncovered synergistic DNA binding of interacting bZIP transcription factorsNature Communications14(1) 2600
202310.1016/j.xplc.2023.100594Li, C., W. Huang, X. Han, G. Zhao, W. Zhang, et al.Diel dynamics of multi-omics in elkhorn fern provide new insights into weak CAM photosynthesisPlant Communications100594
202310.1016/j.cej.2022.138886Lee, J. W., S. S. Bhagwat, N. Kuanyshev, Y. B. Cho, L. Sun, Y.-G. Lee, Y. R. Cortés-Peña, Y. Li, C. V. Rao, J. S. Guest and Y.-S. JinRewiring yeast metabolism for producing 2,3-butanediol and two downstream applications: Techno-economic analysis and life cycle assessment of methyl ethyl ketone (MEK) and agricultural biostimulant productionChemical Engineering Journal451 138886
202310.1002/biot.202200535Lane, S., T. L. Turner and Y.-S. JinGlucose assimilation rate determines the partition of flux at pyruvate between lactic acid and ethanol in Saccharomyces cerevisiaeBiotechnology Journal18(4) 2200535
202310.1007/978-1-0716-2784-6_27Ko, D. K. and F. BrandizziCoexpression Network Construction and Visualization from Transcriptomes Underlying ER Stress ResponsesPlant Proteostasis: Methods and Protocols2581 385–401
202310.1186/s13068-023-02291-6Kim, S.-K., Y. J. Bomble and J. WestphelingSimultaneous expression of an endogenous spermidine synthase and a butanol dehydrogenase from Thermoanaerobacter pseudethanolicus in Clostridium thermocellum results in increased resistance to acetic acid and furans, increased ethanol production and an increase in thermotoleranceBiotechnology for Biofuels and Bioproducts16(1) 46
202310.1007/978-1-0716-2639-9_4Kim, S.-J. and F. BrandizziMicroscopy and Immunocytochemistry-Based Methods to Study Cell Wall Biosynthetic Enzymes in the GolgiGolgi: Methods and Protocols2557 39–51
202310.1111/gcbb.13024Kim, S., B. E. Dale, R. Martinez-Feria, B. Basso, K. Thelen, C. T. Maravelias, D. Landis, T. J. Lark and G. P. RobertsonGlobal warming intensity of biofuel derived from switchgrass grown on marginal land in MichiganGCB Bioenergy15(3) 319–31
202310.1021/acssuschemeng.3c00115Kenny, J. K., J. W. Medlin and G. T. BeckhamQuantification of Phenolic Hydroxyl Groups in Lignin via 19F NMR SpectroscopyACS Sustainable Chemistry & Engineering11(14) 5644–55
202310.1038/s41564-023-01361-7Kelliher, J. M., M. Rudolph, P. Vangay, A. Abbas, M. A. Borton, et al.Cohort-based learning for microbiome research community standardsNature Microbiology8(5) 751–3
202310.1016/j.mtbio.2023.100560Jo, C., J. Zhang, J. M. Tam, G. M. Church, A. S. Khalil, D. Segrè and T.-C. TangUnlocking the magic in mycelium: Using synthetic biology to optimize filamentous fungi for biomanufacturing and sustainabilityMaterials Today Bio19 100560
202310.1128/msystems.00017-21Jo, C., D. B. Bernstein, N. Vaisman, H. M. Frydman and D. SegrèConstruction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial InteractionsmSystems8(2) e00017-21
202310.1016/j.ymben.2023.02.012Jindra, M. A., K. Choe, R. Chowdhury, R. Kong, S. Ghaffari, J. V. Sweedler and B. F. PflegerEvaluation of strategies to narrow the product chain-length distribution of microbially synthesized free fatty acidsMetabolic Engineering77 21–31
202310.1016/j.biortech.2023.128630Jia, Y., S. Maitra and V. SinghChemical-free production of multiple high-value bioproducts from metabolically engineered transgenic sugarcane ‘oilcane’ bagasse and their recovery using nanofiltrationBioresource Technology371 128630
202310.1038/s41579-022-00811-zJansson, J. K. and R. WuSoil viral diversity, ecology and climate changeNature Reviews Microbiology21(5) 296–311
202310.3389/fgeed.2023.1074641Illa-Berenguer, E., P. R. LaFayette and W. A. ParrottEditing efficiencies with Cas9 orthologs, Cas12a endonucleases, and temperature in riceFrontiers in Genome Editing5
202310.1111/gcbb.13020Hussain, M. Z., S. K. Hamilton and G. P. RobertsonSoil phosphorus drawdown by perennial bioenergy cropping systems in the Midwestern USGCB Bioenergy15(2) 254–63
202310.1016/j.biortech.2022.128528Huntington, T., N. R. Baral, M. Yang, E. Sundstrom and C. D. ScownMachine learning for surrogate process models of bioproduction pathwaysBioresource Technology370 128528
202310.1016/j.ymben.2023.01.001Hu, M., H. V. Dinh, Y. Shen, P. F. Suthers, C. J. Foster, C. M. Call, X. Ye, J. Pratas, Z. Fatma, H. Zhao, J. D. Rabinowitz and C. D. MaranasComparative study of two Saccharomyces cerevisiae strains with kinetic models at genome-scaleMetabolic Engineering76 1–17
202310.1038/s41467-023-36515-yHowe, A., N. Stopnisek, S. K. Dooley, F. Yang, K. L. Grady and A. ShadeSeasonal activities of the phyllosphere microbiome of perennial cropsNature Communications14(1) 1039
2023Hou, H. J. M., J. Sebesta, C. Pastore and J. YuProbing CO2 uptake of genetically engineered microalgae using MIMSThe 2023 Alabama State University STEM Research Symposium
2023Hou, H. J. M., J. Sebesta, A. Deshpande, C. Pastore, L. Laurens and J. YuCarbon metabolism of a polyphosphate synthase mutant in cyanobacteriaGorden Conference Photosynthesis
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202110.1093/femsle/fnab153St James, A. R. and R. E. RichardsonStimulation of dissimilatory sulfate reduction in response to sulfate in microcosm incubations from two contrasting temperate peatlands near Ithaca, NY, USAFEMS Microbiology Letters368(21-24)
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202110.1016/j.polymdegradstab.2021.109481Soulenthone, P., Y. Tachibana, M. Suzuki, T. Mizuno, Y. Ohta and K.-i. KasuyaCharacterization of a poly(butylene adipate-co-terephthalate) hydrolase from the mesophilic actinobacteria Rhodococcus fasciansPolymer Degradation and Stability184
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202110.1093/g3journal/jkab222Sorgini, C. A., L. M. Roberts, M. Sullivan, A. B. Cousins, I. Baxter and A. J. StuderThe genetic architecture of leaf stable carbon isotope composition in Zea mays and the effect of transpiration efficiency on leaf elemental accumulationG3: Genes, Genomes, Genetics11(9)
202110.1128/mSystems.00614-21Sorensen, J. W., L. A. Zinke, A. M. ter Horst, C. Santos-Medellín, A. Schroeder and J. B. EmersonDnase treatment improves viral enrichment in agricultural soil viromesmSystems6(5)
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202110.1038/s41598-021-83937-zSilva, P. C., J. A. Ceja-Navarro, F. Azevedo, U. Karaoz, E. L. Brodie and B. JohanssonA novel d-xylose isomerase from the gut of the wood feeding beetle Odontotaenius disjunctus efficiently expressed in Saccharomyces cerevisiaeScientific Reports11(1) 4766
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202110.3390/en14092633Shirkey, G., M. Belongeay, S. Wu, X. Ma, H. Tavakol, A. Anctil, S. Marquette-Pyatt, R. A. Stewart, P. Sinha, R. Corkish, J. Chen and I. CelikAn Environmental and Societal Analysis of the US Electrical Energy Industry Based on the Water–Energy NexusEnergies14(9) 2633
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202110.3390/d13120641Pira, H., C. Risdian, P. Kämpfer, M. Müsken, P. J. Schupp and J. WinkZooshikella harenae sp. nov., Isolated from Pacific Oyster Crassostrea gigas, and Establishment of Zooshikella ganghwensis subsp. marina subsp. nov. and Zooshikella ganghwensis subsp. ganghwensis subsp. novDiversity13(12) 641
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202110.1186/s13068-021-01953-7Pham, L. T. M., K. Deng, T. R. Northen, S. W. Singer, P. D. Adams, B. A. Simmons and K. L. SaleExperimental and theoretical insights into the effects of pH on catalysis of bond-cleavage by the lignin peroxidase isozyme H8 from Phanerochaete chrysosporiumBiotechnology for Biofuels14(1) 108
202110.1099/ijsem.0.004765Peta, V., R. Raths and H. BückingMassilia horti sp. nov. and Noviherbaspirillum arenae sp. nov., two novel soil bacteria of the OxalobacteraceaeInternational Journal of Systematic and Evolutionary Microbiology71(5)
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202110.1016/j.indcrop.2021.113924Pérez-Pimienta, J. A., R. M. García-López, H. O. Méndez-Acosta, V. González-Álvarez, B. A. Simmons, J. A. Méndoza-Pérez and J. Arreola-VargasIonic liquid-water mixtures enhance pretreatment and anaerobic digestion of agave bagasseIndustrial Crops and Products171 113924
202110.1128/AEM.02794-20Perez, J. M., W. S. Kontur, C. Gehl, D. M. Gille, Y. Ma, A. V. Niles, G. Umana, T. J. Donohue and D. R. NogueraRedundancy in Aromatic O-Demethylation and Ring-Opening Reactions in Novosphingobium aromaticivorans and Their Impact in the Metabolism of Plant-Derived PhenolicsApplied and Environmental Microbiology87(8) e02794-20
202110.1186/s12859-021-04472-2Pereira, W. J., F. M. Almeida, D. Conde, K. M. Balmant, P. M. Triozzi, H. W. Schmidt, C. Dervinis, G. J. Pappas and M. KirstAsc-Seurat: analytical single-cell Seurat-based web applicationBMC Bioinformatics22(1)
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202110.3390/plants10010158Pavicic, M., K. Overmyer, A. U. Rehman, P. Jones, D. Jacobson and K. HimanenImage-Based Methods to Score Fungal Pathogen Symptom Progression and Severity in Excised Arabidopsis LeavesPlants10(1)
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202110.1007/s12155-021-10244-wParrish, A. S., M.-S. Lee, T. B. Voigt and D. K. LeeMiscanthus _ giganteus Responses to Nitrogen Fertilization and Harvest Timing in Illinois, USABioEnergy Research14(4) 1126–35
202110.1111/gcbb.12883Park, K., S. A. Sanjaya, T. Quach and E. B. CahoonToward sustainable production of value-added bioenergy and industrial oils in oilseed and biomass feedstocksGCB Bioenergy13(10) 1610–23
202110.1007/s11627-021-10215-yParikh, A., E. J. Brant, M. C. Baloglu and F. AltpeterCRISPR/Cas-mediated genome editing in sorghum — recent progress, challenges and prospectsIn Vitro Cellular & Developmental Biology - Plant57(4) 720–30
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202110.1016/j.ymben.2021.10.007Pang, B., J. Li, C. B. Eiben, E. Oksen, C. Barcelos, R. Chen, E. Englund, E. Sundstrom and J. D. KeaslingLepidopteran mevalonate pathway optimization in Escherichia coli efficiently produces isoprenol analogs for next-generation biofuelsMetabolic Engineering68 210–9
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202110.1128/mSystems.01025-20Otwell, A. E., A. V. Carr, E. L. W. Majumder, M. K. Ruiz, R. L. Wilpiszeski, L. T. Hoang, B. Webb, S. Turkarslan, S. M. Gibbons, D. A. Elias, D. A. Stahl, G. Siuzdak and N. S. BaligaSulfur Metabolites Play Key System-Level Roles in Modulating DenitrificationmSystems6(1) e01025-20
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202110.1111/tpj.15086Oliver, J., M. Fan, B. McKinley, S. Zemelis-Durfee, F. Brandizzi, C. Wilkerson and J. E. MulletThe AGCVIII kinase Dw2 modulates cell proliferation, endomembrane trafficking, and MLG/xylan cell wall localization in elongating stem internodes of Sorghum bicolorThe Plant Journal105(4) 1053–71
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202110.1107/S2053230X21007470Ochoa, J. M., O. Mijares, A. A. Acosta, X. Escoto, N. Leon-Rivera, J. D. Marshall, M. R. Sawaya and T. O. YeatesaStructural characterization of hexameric shell proteins from two types of choline-utilization bacterial microcompartmentsActa Crystallographica Section F: Structural Biology Communications77 275-285
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202110.1073/pnas.2008888118Oates, N. C., A. Abood, A. M. Schirmacher, A. M. Alessi, S. M. Bird, J. P. Bennett, D. R. Leadbeater, Y. Li, A. A. Dowle, S. Liu, V. I. Tymokhin, J. Ralph, S. J. McQueen-Mason and N. C. BruceA multi-omics approach to lignocellulolytic enzyme discovery reveals a new ligninase activity from Parascedosporium putredinis NO1Proceedings of the National Academy of Sciences118(18) e2008888118
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202110.1093/sysbio/syaa038Neumann, J. S., R. Desalle, A. Narechania, B. Schierwater and M. TesslerMorphological Characters Can Strongly Influence Early Animal Relationships Inferred from Phylogenomic Data SetsSystematic Biology70(2) 360–75
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202110.1099/ijsem.0.004912Nde, A. L., G. Charimba, A. Hitzeroth, L. Oosthuizen, L. Steyn, J. D. Newman and C. HugoChryseobacterium pennae sp. nov., isolated from poultry feather wasteInternational Journal of Systematic and Evolutionary Microbiology71(7)
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202110.3390/ijms22084107Nag, A., A. Gerritsen, C. Doeppke and A. E. Harman-WareMachine Learning-Based Classification of Lignocellulosic Biomass from Pyrolysis-Molecular Beam Mass Spectrometry DataInternational Journal of Molecular Sciences22(8) 4107
202110.1128/MRA.00160-21Myers, K. S., M. Place, J. Kominek, D. R. Noguera and T. J. DonohueDelila-PY, a Pipeline for Utilizing the Delila Suite of Software to Identify Potential DNA Binding MotifsMicrobiology Resource Announcements10(15) e00160-21
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202110.1111/tpj.15492Muchlinski, A., M. Jia, K. Tiedge, J. S. Fell, K. A. Pelot, L. Chew, D. Davisson, Y. Chen, J. Siegel, J. T. Lovell and P. ZerbeCytochrome P450-catalyzed biosynthesis of furanoditerpenoids in the bioenergy crop switchgrass (Panicum virgatum L.)Plant Journal108(4) 1053-1068
202110.1016/j.apenergy.2021.117098Mousavi-Avval, S. H. and A. ShahLife cycle energy and environmental impacts of hydroprocessed renewable jet fuel production from pennycressApplied Energy297
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202110.3389/fsufs.2021.706142Mosier, S., S. C. Córdova and G. P. RobertsonRestoring Soil Fertility on Degraded Lands to Meet Food, Fuel, and Climate Security Needs via PerennializationFrontiers in Sustainable Food Systems5
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202110.1093/sysbio/syaa066Morales-Briones, D. F., G. Kadereit, D. T. Tefarikis, M. J. Moore, S. A. Smith, S. F. Brockington, A. Timoneda, W. C. Yim, J. C. Cushman and Y. YangDisentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.lSystematic Biology70(2) 219-235
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202110.1093/jxb/erab090Moore, C. E., K. Meacham-Hensold, P. Lemonnier, R. A. Slattery, C. Benjamin, C. J. Bernacchi, T. Lawson and A. P. CavanaghThe effect of increasing temperature on crop photosynthesis: from enzymes to ecosystemsJournal of Experimental Botany72(8) 2822–44
202110.1093/plcell/koab287Moore, B. M., Y. S. Lee, P. Wang, C. Azodi, E. Grotewold and S.-H. ShiuModeling temporal and hormonal regulation of plant transcriptional response to woundingThe Plant Cell34(2) 867–88
202110.1111/mmi.14717Monge, E. C. and J. G. GardnerEfficient chito-oligosaccharide utilization requires two TonB-dependent transporters and one hexosaminidase in Cellvibrio japonicusMolecular Microbiology116(2) 366-380
202110.1128/MRA.00531-21Mok, S., P. R. Flanagan, E. Roycroft, T. R. Rogers and M. M. FitzgibbonDraft Genome Sequences of Clinical Respiratory Isolates of Mycobacterium goodii Recovered in IrelandMicrobiology Resource Announcements10(31) e00531-21
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202110.1002/ppj2.20022Miao, C., A. Guo, A. M. Thompson, J. Yang, Y. Ge and J. C. SchnableAutomation of leaf counting in maize and sorghum using deep learningPlant Phenome Journal4(1)
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202110.1128/MRA.00628-21McDermith, E. J., A. R. Sterling, M. J. Bertin and B. D. JenkinsDraft Genome Sequence of Salegentibacter sp. Strain BDJ18, a Plankton-Associated Bacterium in the Northeast Atlantic OceanMicrobiology Resource Announcements10(36) e00628-21
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202110.1039/D1GC01727FHuang, K., M. Mohan, A. George, B. A. Simmons, Y. Xu and J. M. GladdenIntegration of acetic acid catalysis with one-pot protic ionic liquid configuration to achieve high-efficient biorefinery of poplar biomassGreen Chemistry23(16) 6036–49
202110.1038/s41557-021-00801-3Huang, J., Z. Liu, B. J. Bloomer, D. S. Clark, A. Mukhopadhyay, J. D. Keasling and J. F. HartwigUnnatural biosynthesis by an engineered microorganism with heterologously expressed natural enzymes and an artificial metalloenzymeNature Chemistry13(12) 1186–91
202110.3390/cells10061526Hu, Z., Z. Nie, C. Yan, H. Huang, X. Ma, Y. Wang, N. Ye, G. A. Tuskan, X. Yang and H. YinTranscriptome and Degradome Profiling Reveals a Role of miR530 in the Circadian Regulation of Gene Expression in Kalanchoë marnierianaCells10(6) 1526
202110.1038/s41438-021-00570-7Hu, X.-L., H. Lu, M. M. Hassan, J. Zhang, G. Yuan, P. E. Abraham, H. K. Shrestha, M. I. Villalobos Solis, J.-G. Chen, T. J. Tschaplinski, M. J. Doktycz, G. A. Tuskan, Z.-M. Cheng and X. YangAdvances and perspectives in discovery and functional analysis of small secreted proteins in plantsHorticulture Research8(1) 130
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202110.1038/s41477-021-00877-2Horton, P., S. P. Long, P. Smith, S. A. Banwart and D. J. BeerlingTechnologies to deliver food and climate security through agricultureNature Plants7(3) 250–5
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202110.1002/btpr.3172Hillman, E. T., M. Li, C. A. Hooker, J. A. Englaender, I. Wheeldon and K. V. SolomonHydrolysis of lignocellulose by anaerobic fungi produces free sugars and organic acids for two-stage fine chemical production with Kluyveromyces marxianusBiotechnology Progress37(5)
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202110.1094/pbiomes-04-20-0029-fiHestrin, R., M. R. Lee, B. K. Whitaker and J. Pett-RidgeThe Switchgrass Microbiome: A Review of Structure, Function, and Taxonomic DistributionPhytobiomes Journal5(1) 14–28
202110.3390/microorganisms9050985Hervé, V., A. Simon, F. Randevoson, G. Cailleau, G. Rajoelison, H. Razakamanarivo, S. Bindschedler, E. Verrecchia and P. JunierFunctional Diversity of the Litter-Associated Fungi from an Oxalate-Carbonate Pathway Ecosystem in MadagascarMicroorganisms9(5) 985
202110.1099/ijsem.0.004977Hering, S., M. K. Jansson and M. E. J. BuhlEikenella glucosivorans sp. nov., isolated from a human throat swab, and emendation of the genus Eikenella to include saccharolytic speciesInternational Journal of Systematic and Evolutionary Microbiology71(9)
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202110.1016/j.tplants.2021.06.015Hassan, M. M., Y. Zhang, G. Yuan, K. De, J.-G. Chen, W. Muchero, G. A. Tuskan, Y. Qi and X. YangConstruct design for CRISPR/Cas-based genome editing in plantsTrends in Plant Science26(11) 1133–52
202110.1002/9783527815128.ch8Harnden, K. A., Y. Wang, L. Vo, H. Zhao and Y. LuEngineering Artificial MetalloenzymesProtein Engineering: Tools and Applications 177–205
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202110.1039/D1GC02744AHaridevan, H., D. A. C. Evans, A. J. Ragauskas, D. J. Martin and P. K. AnnamalaiValorisation of technical lignin in rigid polyurethane foam: a critical evaluation on trends, guidelines and future perspectivesGreen Chemistry23(22) 8725–53
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202110.1186/s13068-021-01897-yHapps, R. M., B. Addison, C. Doeppke, B. S. Donohoe, M. F. Davis and A. E. Harman-WareComparison of methodologies used to determine aromatic lignin unit ratios in lignocellulosic biomassBiotechnology for Biofuels14(1) 58
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202110.1039/D1CB00112DHa, N. S., M. de Raad, L. Z. Han, A. Golini, C. J. Petzold and T. R. NorthenFaster, better, and cheaper: harnessing microfluidics and mass spectrometry for biotechnologyRSC Chemical Biology2(5) 1331–51
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202110.3390/genes12020288Guo, Z., M. Xu, H. Nagano, L. V. Clark, E. J. Sacks and T. YamadaCharacterization of the Ghd8 Flowering Time Gene in a Mini-Core Collection of Miscanthus sinensisGenes12(2) 288
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202110.3390/toxins13120892Ferrara, M., A. Gallo, C. Cervini, L. Gambacorta, M. Solfrizzo, S. E. Baker and G. PerroneEvidence of the Involvement of a Cyclase Gene in the Biosynthesis of Ochratoxin A in Aspergillus carbonariusToxins13(12) 892
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202110.1021/jasms.1c00013Choe, K., P. Xue, H. Zhao and J. V. SweedlermacroMS: Image-Guided Analysis of Random Objects by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass SpectrometryJournal of the American Society for Mass Spectrometry32(5) 1180–8
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202110.3868/11-00559-001Chen, J.Biophysical Models and Applications in Ecosystem AnalysisMichigan State University Press
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202110.1002/prot.26052Chen, C., T. Wu, Z. Guo and J. ChengCombination of deep neural network with attention mechanism enhances the explainability of protein contact predictionProteins: Structure, Function and Bioinformatics89(6) 697-707
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202110.1039/d1gc02865kChang, H., M. S. Kim, G. W. Huber and J. A. DumesicDesign of closed-loop recycling production of a Diels-Alder polymer from a biomass-derived difuran as a functional additive for polyurethanesGreen Chemistry23(23) 9479-9488
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202110.3390/cryst11101227Chai, L., P. Zhu, J. Chai, C. Pang, B. Andi, S. McSweeney, J. Shanklin and Q. LiuAlphaFold Protein Structure Database for Sequence-Independent Molecular ReplacementCrystals11(10) 1227
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202110.1094/pbiomes-07-20-0051-rBowsher, A. W., G. M. N. Benucci, G. Bonito and A. ShadeSeasonal Dynamics of Core Fungi in the Switchgrass Phyllosphere, and Co-Occurrence with Leaf BacteriaPhytobiomes Journal5(1) 60–8
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202110.1186/s40168-020-00983-xBlaustein, R. A., L. M. Michelitsch, A. J. Glawe, H. Lee, S. Huttelmaier, N. Hellgeth, S. Ben Maamar and E. M. HartmannToothbrush microbiomes feature a meeting ground for human oral and environmental microbiotaMicrobiome9(1) 32
202110.1073/pnas.2100281118Blaby-Haas, C. E.Cyanobacteria provide a new paradigm in the regulation of cofactor dependenceProceedings of the National Academy of Sciences118(7) e2100281118
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202110.1371/journal.pone.0248607Bible, A. N., M. Chang and J. L. Morrell-FalveyIdentification of a diguanylate cyclase expressed in the presence of plants and its application for discovering candidate gene products involved in plant colonization by Pantoea sp. YR343PLoS ONE16(7) e0248607
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202110.1016/j.scitotenv.2020.144429Bhatia, S. K., S. S. Jagtap, A. A. Bedekar, R. K. Bhatia, K. Rajendran, A. Pugazhendhi, C. V. Rao, A. E. Atabani, G. Kumar and Y. H. YangRenewable biohydrogen production from lignocellulosic biomass using fermentation and integration of systems with other energy generation technologiesScience of the Total Environment765 144429
202110.1021/acssuschemeng.1c05441Bhagwat, S. S., Y. Li, Y. R. Cortés-Peña, E. C. Brace, T. A. Martin, H. Zhao and J. S. GuestSustainable Production of Acrylic Acid via 3-Hydroxypropionic Acid from Lignocellulosic BiomassACS Sustainable Chemistry & Engineering9(49) 16659–69
202110.1021/acssuschemeng.0c04240Berstis, L., T. Elder, R. Dixon, M. Crowley and G. T. BeckhamCoupling of Flavonoid Initiation Sites with Monolignols Studied by Density Functional TheoryACS Sustainable Chemistry & Engineering9(4) 1518–28
202110.1016/j.ohx.2021.e00208Berry, T. D., C. Creelman, N. Nickerson, A. Enders and T. WhitmanAn open-source, automated, gas sampling peripheral for laboratory incubation experiments using cavity ring-down spectroscopyHardwareX10
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202110.1002/agg2.20214Bendorf, J., S. Hubbard, C. J. Kucharik and A. VanLoockeRapid changes in agricultural land use and hydrology in the Driftless RegionAgrosystems, Geosciences & Environment4(4) e20214
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202110.1128/mSystems.00906-21Beach, N. K., K. S. Myers, B. R. Owen, M. Seib, T. J. Donohue and D. R. NogueraExploring the Meta-regulon of the CRP/FNR Family of Global Transcriptional Regulators in a Partial-Nitritation Anammox MicrobiomemSystems6(5) e00906-21
202110.1021/acs.biochem.1c00613Bathe, U., B. J. Leong, D. R. McCarty, C. S. Henry, P. E. Abraham, M. A. Wilson and A. D. HansonThe Moderately (D)efficient Enzyme: Catalysis-Related Damage In Vivo and Its RepairBiochemistry60(47) 3555–65
202110.1093/plcell/koaa016Bastiaanse, H., I. M. Henry, H. Tsai, M. Lieberman, C. Canning, L. Comai and A. GrooverA systems genetics approach to deciphering the effect of dosage variation on leaf morphology in PopulusPlant Cell33(4) 940-960
202110.1038/s41467-021-21763-7Basso, B., R. A. Martinez-Feria, L. Rill and J. T. RitchieContrasting long-term temperature trends reveal minor changes in projected potential evapotranspiration in the US MidwestNature Communications12(1) 1476
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202110.1089/crispr.2021.29126.rbaBarrangou, R.The CRISPR Chronicles and the Power of StorytellingThe CRISPR Journal4(2) 158–9
202110.1073/pnas.2115292118Barnett, S. E., N. D. Youngblut, C. N. Koechli and D. H. BuckleyMultisubstrate DNA stable isotope probing reveals guild structure of bacteria that mediate soil carbon cyclingProceedings of the National Academy of Sciences of the United States of America118(47)
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202110.1093/plcell/koaa021Baetsen-Young, A., H. Chen, S. H. Shiu and B. DayContrasting transcriptional responses to Fusarium virguliforme colonization in symptomatic and asymptomatic hostsThe Plant Cell33(2) 224–47
202110.1002/bit.27603Badr, K., W. Whelan, Q. P. He and J. WangFast and easy quantitative characterization of methanotroph–photoautotroph coculturesBiotechnology and Bioengineering118(2) 703-714
202110.1007/s00425-021-03718-wBabst, B. A., A. Karve, A. Sementilli, I. Dweikat and D. M. BraunPhysiology and whole-plant carbon partitioning during stem sugar accumulation in sweet dwarf sorghumPlanta254(4)
202110.1128/MRA.00954-20Babalola, O. O., R. R. Molefe and A. E. AmooMetagenome Assembly and Metagenome-Assembled Genome Sequences from the Rhizosphere of Maize Plants in Mafikeng, South AfricaMicrobiology Resource Announcements10(8) e00954-20
202110.1128/MRA.00029-21Babalola, O. O., O. A. Fasusi, A. E. Amoo and A. S. AyangbenroDraft Genomic Analysis of Pseudomonas sp. Strain OA3, a Potential Plant Growth-Promoting Rhizospheric BacteriumMicrobiology Resource Announcements10(11) e00029-21
202110.1016/j.rhisph.2021.100342Babalola, O. O., O. A. Fasusi, A. E. Amoo and A. S. AyangbenroGenomic analysis of a Pseudomonas strain with multiple plant growth promoting propertiesRhizosphere18 100342
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