Research Publications

This bibliography contains publications from research funded by the Genomic Science Program. Most publications are from FY 2021 and beyond, though older publications appear in some cases. If you are a GSP-funded researcher and don’t see your publications listed below, contact Marissa Mills (millsmd@ornl.gov) to get your publications added.

Year	DOI	Authors	Title	Journal	Volume/Pages
2023	10.1002/anie.202212440	Zhou, Y., E. N. Mirts, S. Yook, M. Waugh, R. Martini, Y.-S. Jin and Y. Lu	Reshaping the 2-Pyrone Synthase Active Site for Chemoselective Biosynthesis of Polyketides	Angewandte Chemie International Edition	62(5) e202212440
2023	10.1021/acs.analchem.2c04845	Zhou, S., Z. Fatma, P. Xue, S. Mishra, M. Cao, H. Zhao and J. V. Sweedler	Mass Spectrometry-Based High-Throughput Quantification of Bioproducts in Liquid Culture	Analytical Chemistry	95(8) 4067–76
2023	10.1016/j.ijbiomac.2023.124743	Zhou, F., H. Wu, Y. Chen, M. Wang, G. A. Tuskan and T. Yin	Function and molecular mechanism of a poplar placenta limited MIXTA gene in regulating differentiation of plant epidermal cells	International Journal of Biological Macromolecules	242 124743
2023	10.1111/gcbb.13021	Zhang, N., B. P. Sharma and M. Khanna	Determining spatially varying profit-maximizing management practices for miscanthus and switchgrass production in the rainfed United States	GCB Bioenergy	15(3) 271–82
2023	10.1016/j.copbio.2022.102870	Zha, J., Z. Zhao, Z. Xiao, T. Eng, A. Mukhopadhyay, M. A. G. Koffas and Y. J. Tang	Biosystem design of Corynebacterium glutamicum for bioproduction	Current Opinion in Biotechnology	79 102870
2023	10.3390/plants12081657	Yuan, G., Y. Liu, T. Yao, W. Muchero, J.-G. Chen, G. A. Tuskan and X. Yang	eYGFPuv-Assisted Transgenic Selection in Populus deltoides WV94 and Multiplex Genome Editing in Protoplasts of P. trichocarpa x P. deltoides Clone ’52-225’	Plants	12(8) 1657
2023	10.1128/aem.01753-22	Yayo, J., T. Rydzak, T. Kuil, A. Karlsson, D. J. Harding, A. M. Guss and A. J. A. v. Maris	The Roles of Nicotinamide Adenine Dinucleotide Phosphate Reoxidation and Ammonium Assimilation in the Secretion of Amino Acids as Byproducts of Clostridium thermocellum	Applied and Environmental Microbiology	89(1) e01753-22
2023	10.1093/hr/uhad085	Yao, T., G. Yuan, H. Lu, Y. Liu, J. Zhang, G. A. Tuskan, W. Muchero, J.-G. Chen and X. Yang	CRISPR/Cas9-based gene activation and base editing in Populus	Horticulture Research	uhad085
2023	10.1186/s13068-023-02302-6	Yang, J., T. Sooksa-nguan, B. Kannan, S. Cano-Alfanar, H. Liu, A. Kent, J. Shanklin, F. Altpeter and A. Howe	Microbiome differences in sugarcane and metabolically engineered oilcane accessions and their implications for bioenergy production	Biotechnology for Biofuels and Bioproducts	16(1) 56
2023	10.1016/j.ymben.2023.01.003	Yan, Q., T. B. Jacobson, Z. Ye, Y. R. Cortés-Pena, S. S. Bhagwat, S. Hubbard, W. T. Cordell, R. E. Oleniczak, F. V. Gambacorta, J. R. Vazquez, E. V. Shusta, D. Amador-Noguez, J. S. Guest and B. F. Pfleger	Evaluation of 1,2-diacyl-3-acetyl triacylglycerol production in Yarrowia lipolytica	Metabolic Engineering	76 18–28
2023	US11629356B2	Xie, M., W. Muchero, J.-G. Chen and G. A. Tuskan	Regulating lignin biosynthesis and sugar release in plants	United States Patent	UT Battelle LLC
2023	10.1016/j.mec.2023.e00220	Wu, Z.-Y., W. Sun, Y. Shen, J. Pratas, P. F. Suthers, P.-H. Hsieh, S. Dwaraknath, J. D. Rabinowitz, C. D. Maranas, Z. Shao and Y. Yoshikuni	Metabolic engineering of low-pH-tolerant non-model yeast, Issatchenkia orientalis, for production of citramalate	Metabolic Engineering Communications	16 e00220
2023	10.1128/aem.00500-23	Wu, X., S. Gushgari-Doyle, L. M. Lui, A. J. Hendrickson, Y. Liu, S. Jagadamma, T. N. Nielsen, N. B. Justice, T. Simmons, N. J. Hess, D. C. Joyner, T. C. Hazen, A. P. Arkin and R. Chakraborty	Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical Zone	Applied and Environmental Microbiology	e00500-23
2023	10.1016/j.engmic.2023.100074	Wei, H., W. Wang, Y.-C. Chou, M. E. Himmel, X. Chen, Y. J. Bomble and M. Zhang	Prospects for engineering Ralstonia eutropha and Zymomonas mobilis for the autotrophic production of 2,3-butanediol from CO₂ and H₂	Engineering Microbiology	3(2) 100074
2023	10.1021/acs.est.2c06674	Wang, Y., N. R. Baral, M. Yang and C. D. Scown	Co-Processing Agricultural Residues and Wet Organic Waste Can Produce Lower-Cost Carbon-Negative Fuels and Bioplastics	Environmental Science & Technology	57(7) 2958–69
2023	10.1016/j.biortech.2022.128216	Walls, L. E., P. Otoupal, R. Ledesma-Amaro, S. B. Velasquez-Orta, J. M. Gladden and L. Rios-Solis	Bioconversion of cellulose into bisabolene using Ruminococcus flavefaciens and Rhodosporidium toruloides	Bioresource Technology	368 128216
2023	10.1021/acs.chemrev.2c00403	Volk, M. J., V. G. Tran, S.-I. Tan, S. Mishra, Z. Fatma, A. Boob, H. Li, P. Xue, T. A. Martin and H. Zhao	Metabolic Engineering: Methodologies and Applications	Chemical Reviews	123(9) 5521–70
2023	10.1111/nph.18734	Vigneaud, J., A. Kohler, M. D. Sow, A. Delaunay, L. Fauchery, et al.	DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus	New Phytologist	238(6) 2561–77
2023	10.1002/bit.28337	VanArsdale, E., A. Navid, M. J. Chu, T. M. Halvorsen, G. F. Payne, Y. Jiao, W. E. Bentley and M. C. Yung	Electrogenetic signaling and information propagation for controlling microbial consortia via programmed lysis	Biotechnology and Bioengineering	120(5) 1366–81
2023	10.1017/S1473550423000058	Trubl, G., K. M. Stedman, K. F. Bywaters, E. E. Matula, P. Sommers, et al.	Astrovirology: how viruses enhance our understanding of life in the Universe	International Journal of Astrobiology	1–25
2023		Tibocha-Bonilla, J. D., R. Santibáñez-Palominos and K. Zengler	CoralME - An automated tool for next-generation metabolic model design and optimization	Metabolic Engineering 15
2023	10.3389/fpls.2022.1023571	Tejera-Nieves, M., M. Abraha, J. Chen, S. K. Hamilton, G. P. Robertson and B. J. Walker	Seasonal decline in leaf photosynthesis in perennial switchgrass explained by sink limitations and water deficit	Frontiers in Plant Science	13
2023	10.1021/acssuschemeng.2c06876	Tan, L., H. L. Scott, M. D. Smith, S. V. Pingali, H. M. O’Neill, J. L. Morrell-Falvey, J. Katsaras, J. C. Smith, B. H. Davison, J. G. Elkins and J. D. Nickels	Amphiphilic Co-Solvents Modulate the Structure of Membrane Domains	ACS Sustainable Chemistry & Engineering	11(4) 1598–609
2023	10.1016/j.ces.2022.118406	Taifan, G. S. P. and C. T. Maravelias	Integrated membrane material design and system synthesis	Chemical Engineering Science	269 118406
2023		Suzuki, Y. and J. C. Venter	20 Years of the Minimal Cell’s Rise from Theory to Practice	Keiko SFC Journal	22(2) 42–53
2023		Suzuki, Y., A. Murao, J. Sebesta, B. Yang, D. H. Hernandez, et al.	IMAGINE BioSecurity: Genome-Scale Engineering and Modeling for Secure Biosystems Design	DOE Genomic Sciences Program Annual Meeting
2023	10.1021/acssuschemeng.2c05199	Sumer, Z. and R. C. Van Lehn	Heuristic Computational Model for Predicting Lignin Solubility in Tailored Organic Solvents	ACS Sustainable Chemistry & Engineering	11(1) 187–98
2023	10.1038/s41396-022-01354-0	Stone, B. W. G., P. Dijkstra, B. K. Finley, R. Fitzpatrick, M. M. Foley, et al.	Life history strategies among soil bacteria—dichotomy for few, continuum for many	The ISME Journal	17(4) 611–9
2023	10.1007/s00442-023-05322-z	Stone, B. W., S. J. Blazewicz, B. J. Koch, P. Dijkstra, M. Hayer, K. S. Hofmockel, X. J. A. Liu, R. L. Mau, J. Pett-Ridge, E. Schwartz and B. A. Hungate	Nutrients strengthen density dependence of per-capita growth and mortality rates in the soil bacterial community	Oecologia	201(3) 771–82
2023	10.1021/acs.est.2c07936	Stewart, D. W., Y. R. Cortés-Peña, Y. Li, A. S. Stillwell, M. Khanna and J. S. Guest	Implications of Biorefinery Policy Incentives and Location-Specific Economic Parameters for the Financial Viability of Biofuels	Environmental Science & Technology	57(6) 2262–71
2023	10.1002/ijch.202200083	Stephens, K. and W. E. Bentley	Quorum Sensing from Two Engineers’ Perspectives	Israel Journal of Chemistry	e202200083
2023	10.1007/s00438-022-01987-y	Srivastava, S., S. Bombaywala, S. J. Jakhesara, N. V. Patil, C. G. Joshi, H. J. Purohit and N. A. Dafale	Potential of camel rumen derived Bacillus subtilis and Bacillus velezensis strains for application in plant biomass hydrolysis	Molecular Genetics and Genomics	298(2) 361–74
2023	10.1007/s10482-022-01801-0	Sreya, P., G. Suresh, A. Rai, B. Ria, L. Vighnesh, V. C. Agre, U. Jagadeeshwari, C. Sasikala and C. V. Ramana	Revisiting the taxonomy of the genus Rhodopirellula with the proposal for reclassification of the genus to Rhodopirellula sensu stricto, Aporhodopirellula gen. nov., Allorhodopirellula gen. nov. and Neorhodopirellula gen. nov	Antonie van Leeuwenhoek	116(3) 243–64
2023	10.1039/D2NP00077F	Sirirungruang, S., C. R. Barnum, S. N. Tang and P. M. Shih	Plant glycosyltransferases for expanding bioactive glycoside diversity	Natural Product Reports
2023	10.1002/bbb.2427	Singh, R., S. S. Bhagwat, M. B. Viswanathan, Y. R. Cortés-Peña, K. K. Eilts, G. McDonough, M. Cao, J. S. Guest, H. Zhao and V. Singh	Adsorptive separation and recovery of triacetic acid lactone from fermentation broth	Biofuels, Bioproducts and Biorefining	17(1) 109–20
2023	10.1111/gcb.16609	Silverstein, M. R., D. Segrè and J. M. Bhatnagar	Environmental microbiome engineering for the mitigation of climate change	Global Change Biology	29(8) 2050–66
2023	10.3390/cells12071082	Shrestha, H., T. Yao, Z. Qiao, W. Muchero, R. L. Hettich, J.-G. Chen and P. E. Abraham	Lectin Receptor-like Kinase Signaling during Engineered Ectomycorrhiza Colonization	Cells	12(7) 1082
2023	10.1128/aem.00406-23	Sharma, B. D., D. G. Olson, R. J. Giannone, R. L. Hettich and L. R. Lynd	Characterization and Amelioration of Filtration Difficulties Encountered in Metabolomic Studies of Clostridium thermocellum at Elevated Sugar Concentrations	Applied and Environmental Microbiology	89(4) e00406-23
2023	10.1016/j.mib.2022.102263	Shade, A.	Microbiome rescue: directing resilience of environmental microbial communities	Current Opinion in Microbiology	72 102263
2023	10.1016/j.scitotenv.2022.159496	Semedo, M. and B. Song	Sediment metagenomics reveals the impacts of poultry industry wastewater on antibiotic resistance and nitrogen cycling genes in tidal creek ecosystems	Science of The Total Environment	857(Part 2) 159496
2023		Sebesta, J., C. Pastore, H. Hou and J. Yu	Biocontainment of genetically modified Synechocystis sp. PCC 6803	The 2023 Alabama State University STEM Research Symposium
2023		Sebesta, J., M. Cantrell, E. Schaedig, H. Hou, C. Pastore, K. Chou, W. Xiong, M. Guarnieri and J. Yu	Polyphosphate kinase deletion in Synechocystis sp. PCC6803 increases productivity in controlled conditions but decreases tolerance to a variety of stress conditions	Gorden Conference Photosynthesis
2023	10.1016/j.ymben.2023.04.003	Schroeder, W. L., T. Kuil, A. J. A. van Maris, D. G. Olson, L. R. Lynd and C. D. Maranas	A detailed genome-scale metabolic model of Clostridium thermocellum investigates sources of pyrophosphate for driving glycolysis	Metabolic Engineering	77 306–22
2023	10.3389/fmicb.2023.1219318	Schaedig, E., M. Cantrell, C. Urban, X. Zhao, D. Greene, J. Dancer, M. Gross, J. Sebesta, K. J. Chou, J. Grabowy, M. Gross, K. Kumar and J. Yu	Isolation of phosphorus-hyperaccumulating microalgae from revolving algal biofilm (RAB) wastewater treatment systems	Frontiers in Microbiology	14
2023	10.1007/s10482-022-01804-x	Saticioglu, I. B., H. Ay, S. Altun, E. Karakaya, E. S. Gunduz, D. Aydogdu, D. Yarim, N. Erkek and M. Duman	Genomic insight into Myroides oncorhynchi sp. nov., a new member of the Myroides genus, isolated from the internal organ of rainbow trout (Oncorhynchus mykiss)	Antonie van Leeuwenhoek	116(3) 291–302
2023	10.1128/jb.00338-22	Riley, L. A., I. C. Payne, M. Tumen-Velasquez and A. M. Guss	Simple and Rapid Site-Specific Integration of Multiple Heterologous DNAs into the Escherichia coli Chromosome	Journal of Bacteriology	205(2) e00338-22
2023	10.1016/j.jaridenv.2022.104876	Reeve, S., B. Palmer, P. Cobb, N. Pietrasiak and D. A. Lipson	Facilitating restoration of degraded biological soil crusts using mixed culture inoculation	Journal of Arid Environments	208 104876
2023	10.1038/s41559-022-01936-3	Price, M.	Erroneous predictions of auxotrophies by CarveMe	Nature Ecology & Evolution	7(2) 194–95
2023	10.1038/s41477-023-01358-4	Prabhakar, P. K., J. H. Pereira, R. Taujale, W. Shao, V. S. Bharadwaj, D. Chapla, J.-Y. Yang, Y. J. Bomble, K. W. Moremen, N. Kannan, M. Hammel, P. D. Adams, H. V. Scheller and B. R. Urbanowicz	Structural and biochemical insight into a modular _-1,4-galactan synthase in plants	Nature Plants	9(3) 486–500
2023	10.1016/j.copbio.2022.102869	Ploessl, D., Y. Zhao and Z. Shao	Engineering of non-model eukaryotes for bioenergy and biochemical production	Current Opinion in Biotechnology	79 102869
2023	10.1016/j.copbio.2023.102913	Pfleger, B. F. and R. Takors	Recent progress in the synthesis of advanced biofuel and bioproducts	Current Opinion in Biotechnology	80 102913
2023		Pastore, C.	Evaluating the inability to store polyphosphate as a biocontainment strategy in genetically modified microalgae	DOE Office of Science’s Science Undergraduate Laboratory Internship Program Final Report
2023	10.1111/1462-2920.16296	Park, M.-R., R. Gauttam, B. Fong, Y. Chen, H. G. Lim, A. M. Feist, A. Mukhopadhyay, C. J. Petzold, B. A. Simmons and S. W. Singer	Revealing oxidative pentose metabolism in new Pseudomonas putida isolates	Environmental Microbiology	25(2) 493–504
2023	10.1038/s41467-023-39010-6	Pang, C., J. Chai, P. Zhu, J. Shanklin and Q. Liu	Structural mechanism of intracellular autoregulation of zinc uptake in ZIP transporters	Nature Communications	14(1) 3404
2023	10.1007/s00248-022-02137-y	Palmer, B., D. Lawson and D. A. Lipson	Years After a Fire, Biocrust Microbial Communities are Similar to Unburned Communities in a Coastal Grassland	Microbial Ecology	85(3) 1028–44
2023	10.1111/nph.18624	Ortega, M. A., R. Zhou, M. S. S. Chen, W. P. Bewg, B. Simon and C.-J. Tsai	In vitro floral development in poplar: insights into seed trichome regulation and trimonoecy	New Phytologist	237(4) 1078–81
2023	10.1128/mra.00359-22	O’Toole, P., R. A. Daly, R. K. Afshar, M. Shaffer, K. C. Wrighton and B. B. McGivern	Draft Metagenome-Assembled Genome Sequence of a Novel Citricoccus Species from Agricultural Soil in Western Colorado	Microbiology Resource Announcements	12(1) e00359-22
2023	10.1093/plphys/kiac580	O’Leary, B. M., A. P. Scafaro and L. M. York	High-throughput, dynamic, multi-dimensional: an expanding repertoire of plant respiration measurements	Plant Physiology	191(4) 2070–83
2023	10.3389/frmbi.2023.1078024	Naylor, D., K. Naasko, M. Smith, S. Couvillion, C. Nicora, J. Trejo, S. Fransen, R. Danczak, R. McClure, K. S. Hofmockel and J. K. Jansson	Interactive effects of depth and differential irrigation on soil microbiome composition and functioning	Frontiers in Microbiomes	2
2023	10.1111/nph.18518	Mottiar, Y., R. A. Smith, S. D. Karlen, J. Ralph and S. D. Mansfield	Evolution of p-coumaroylated lignin in eudicots provides new tools for cell wall engineering	New Phytologist	237(1) 251–64
2023	10.1111/pbi.13935	Mottiar, Y., S. D. Karlen, R. E. Goacher, J. Ralph and S. D. Mansfield	Metabolic engineering of p-hydroxybenzoate in poplar lignin	Plant Biotechnology Journal	21(1) 176–88
2023	10.1021/acssuschemeng.3c00624	Mohan, M., M. D. Smith, O. N. Demerdash, B. A. Simmons, S. Singh, M. K. Kidder and J. C. Smith	Quantum Chemistry-Driven Machine Learning Approach for the Prediction of the Surface Tension and Speed of Sound in Ionic Liquids	ACS Sustainable Chemistry & Engineering	11(20) 7809–21
2023	10.1038/s41598-022-25372-2	Mohan, M., B. A. Simmons, K. L. Sale and S. Singh	Multiscale molecular simulations for the solvation of lignin in ionic liquids	Scientific Reports	13(1) 271
2023	10.1039/D2GC04425K	Mohan, M., O. Demerdash, B. A. Simmons, J. C. Smith, M. K. Kidder and S. Singh	Accurate prediction of carbon dioxide capture by deep eutectic solvents using quantum chemistry and a neural network	Green Chemistry	25(9) 3475–92
2023	10.1094/pbiomes-08-22-0046-fi	Mechan, M., J. Mullet and A. Shade	Phyllosphere exudates select for distinct microbiome members in sorghum epicuticular wax and aerial root mucilage	Phytobiomes Journal
2023	10.1016/j.ymben.2023.02.006	McNaught, K. J., E. Kuatsjah, M. Zahn, É. T. Prates, H. Shao, et al.	Initiation of fatty acid biosynthesis in Pseudomonas putida KT2440	Metabolic Engineering	76 193–203
2023	10.1038/s41467-023-37164-x	McLaughlin, S., K. Zhalnina, S. Kosina, T. R. Northen and J. Sasse	The core metabolome and root exudation dynamics of three phylogenetically distinct plant species	Nature Communications	14(1) 1649
2023	10.1002/eap.2784	McDaniel, M. D., J. A. Bird, J. Pett-Ridge, E. Marin-Spiotta, T. M. Schmidt and A. S. Grandy	Diversifying and perennializing plants in agroecosystems alters retention of new C and N from crop residues	Ecological Applications	33(2) e2784
2023	10.3389/fmicb.2022.1046661	McClure, R., M. Garcia, S. Couvillion, Y. Farris and K. S. Hofmockel	Removal of primary nutrient degraders reduces growth of soil microbial communities with genomic redundancy	Frontiers in Microbiology	13
2023	10.1002/tpg2.20298	May, D., K. Paldi and F. Altpeter	Targeted mutagenesis with sequence-specific nucleases for accelerated improvement of polyploid crops: Progress, challenges, and prospects	The Plant Genome	e20298
2023	10.1016/j.copbio.2022.102881	Martin, H. G., T. Radivojevic, J. Zucker, K. Bouchard, J. Sustarich, et al.	Perspectives for self-driving labs in synthetic biology	Current Opinion in Biotechnology	79 102881
2023	10.1016/j.scitotenv.2022.158863	Loiola, M., A. E. T. Silva, M. Krull, F. A. Barbosa, E. H. Galvão, V. F. Patire, I. C. S. Cruz, F. Barros, V. Hatje and P. M. Meirelles	Mangrove microbial community recovery and their role in early stages of forest recolonization within shrimp ponds	Science of The Total Environment	855 158863
2023	10.1093/plphys/kiad076	Liu, Y., G. Yuan, B. Hyden, G. A. Tuskan, P. E. Abraham and X. Yang	Expanding the application of anti-CRISPR proteins in plants for tunable genome editing	Plant Physiology	192(1) 60–4
2023	10.1039/D3RA01546G	Li, Y., X. Meng, R. Meng, T. Cai, Y. Pu, Z.-M. Zhao and A. J. Ragauskas	Valorization of homogeneous linear catechyl lignin: opportunities and challenges	RSC Advances	13(19) 12750–9
2023	10.1021/acssuschemeng.2c07139	Li, Y., G. A. Kontos, D. V. Cabrera, N. M. Avila, T. W. Parkinson, M. B. Viswanathan, V. Singh, F. Altpeter, R. A. Labatut and J. S. Guest	Design of a High-Rate Wastewater Treatment Process for Energy and Water Recovery at Biorefineries	ACS Sustainable Chemistry & Engineering	11(9) 3861–72
2023	10.1038/s41467-023-38096-2	Li, M., T. Yao, W. Lin, W. E. Hinckley, M. Galli, W. Muchero, A. Gallavotti, J.-G. Chen and S.-s. C. Huang	Double DAP-seq uncovered synergistic DNA binding of interacting bZIP transcription factors	Nature Communications	14(1) 2600
2023	10.1016/j.xplc.2023.100594	Li, C., W. Huang, X. Han, G. Zhao, W. Zhang, et al.	Diel dynamics of multi-omics in elkhorn fern provide new insights into weak CAM photosynthesis	Plant Communications	100594
2023	10.1016/j.cej.2022.138886	Lee, J. W., S. S. Bhagwat, N. Kuanyshev, Y. B. Cho, L. Sun, Y.-G. Lee, Y. R. Cortés-Peña, Y. Li, C. V. Rao, J. S. Guest and Y.-S. Jin	Rewiring yeast metabolism for producing 2,3-butanediol and two downstream applications: Techno-economic analysis and life cycle assessment of methyl ethyl ketone (MEK) and agricultural biostimulant production	Chemical Engineering Journal	451 138886
2023	10.1002/biot.202200535	Lane, S., T. L. Turner and Y.-S. Jin	Glucose assimilation rate determines the partition of flux at pyruvate between lactic acid and ethanol in Saccharomyces cerevisiae	Biotechnology Journal	18(4) 2200535
2023	10.1007/978-1-0716-2784-6_27	Ko, D. K. and F. Brandizzi	Coexpression Network Construction and Visualization from Transcriptomes Underlying ER Stress Responses	Plant Proteostasis: Methods and Protocols	2581 385–401
2023	10.1186/s13068-023-02291-6	Kim, S.-K., Y. J. Bomble and J. Westpheling	Simultaneous expression of an endogenous spermidine synthase and a butanol dehydrogenase from Thermoanaerobacter pseudethanolicus in Clostridium thermocellum results in increased resistance to acetic acid and furans, increased ethanol production and an increase in thermotolerance	Biotechnology for Biofuels and Bioproducts	16(1) 46
2023	10.1007/978-1-0716-2639-9_4	Kim, S.-J. and F. Brandizzi	Microscopy and Immunocytochemistry-Based Methods to Study Cell Wall Biosynthetic Enzymes in the Golgi	Golgi: Methods and Protocols	2557 39–51
2023	10.1111/gcbb.13024	Kim, S., B. E. Dale, R. Martinez-Feria, B. Basso, K. Thelen, C. T. Maravelias, D. Landis, T. J. Lark and G. P. Robertson	Global warming intensity of biofuel derived from switchgrass grown on marginal land in Michigan	GCB Bioenergy	15(3) 319–31
2023	10.1021/acssuschemeng.3c00115	Kenny, J. K., J. W. Medlin and G. T. Beckham	Quantification of Phenolic Hydroxyl Groups in Lignin via ¹⁹F NMR Spectroscopy	ACS Sustainable Chemistry & Engineering	11(14) 5644–55
2023	10.1038/s41564-023-01361-7	Kelliher, J. M., M. Rudolph, P. Vangay, A. Abbas, M. A. Borton, et al.	Cohort-based learning for microbiome research community standards	Nature Microbiology	8(5) 751–3
2023	10.1016/j.mtbio.2023.100560	Jo, C., J. Zhang, J. M. Tam, G. M. Church, A. S. Khalil, D. Segrè and T.-C. Tang	Unlocking the magic in mycelium: Using synthetic biology to optimize filamentous fungi for biomanufacturing and sustainability	Materials Today Bio	19 100560
2023	10.1128/msystems.00017-21	Jo, C., D. B. Bernstein, N. Vaisman, H. M. Frydman and D. Segrè	Construction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial Interactions	mSystems	8(2) e00017-21
2023	10.1016/j.ymben.2023.02.012	Jindra, M. A., K. Choe, R. Chowdhury, R. Kong, S. Ghaffari, J. V. Sweedler and B. F. Pfleger	Evaluation of strategies to narrow the product chain-length distribution of microbially synthesized free fatty acids	Metabolic Engineering	77 21–31
2023	10.1016/j.biortech.2023.128630	Jia, Y., S. Maitra and V. Singh	Chemical-free production of multiple high-value bioproducts from metabolically engineered transgenic sugarcane ‘oilcane’ bagasse and their recovery using nanofiltration	Bioresource Technology	371 128630
2023	10.1038/s41579-022-00811-z	Jansson, J. K. and R. Wu	Soil viral diversity, ecology and climate change	Nature Reviews Microbiology	21(5) 296–311
2023	10.3389/fgeed.2023.1074641	Illa-Berenguer, E., P. R. LaFayette and W. A. Parrott	Editing efficiencies with Cas9 orthologs, Cas12a endonucleases, and temperature in rice	Frontiers in Genome Editing	5
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2022	10.1038/s41587-022-01248-8	Scown, C. D. and J. D. Keasling	Sustainable manufacturing with synthetic biology	Nature Biotechnology	40(3) 304–7
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