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Systems Biology for Energy and the Environment

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Genomic Science Program

Research Summary
2020 Genomic Sciences Program Annual Principal Investigator (PI) Meeting

February 24 – 26, 2020

Abstract Book

provided by Oak Ridge Associated Universities (ORAU)

Agenda (PDF)

Meeting Introduction (PDF)
Todd Anderson, Director, Biological Systems Science Division, DOE BER

Individual Abstract PDFs

Lead PIPI OrganizationPresenterPoster Abstract TitleResearch Area
Abraham Oak Ridge National Laboratory Abraham Improving the safety and outcome of research using next-generation genome engineering Biosystems Design
Adams Lawrence Berkeley National Laboratory Carlson Selective Carbon Sources Influence the End-Products of Microbial Nitrate Respiration Environmental Microbiology
Adams Lawrence Berkeley National Laboratory Chakraborty Applying Stable Isotopes for Source Fingerprinting of Dissolved Organic Nitrogen in Groundwater Environmental Microbiology
Adams Lawrence Berkeley National Laboratory Chandonia The ENIGMA Data Clearinghouse: A platform for rigorous self-validated data modeling and integrative, reproducible data analysis Computational Biology
Adams Lawrence Berkeley National Laboratory Deutschbauaer Integrating Genomics, Physiology and Genetics of the Oak Ridge Field Research Site Microbiome Environmental Microbiology
Adams University of Washington Hunt High nitrous oxide emissions from a nitrate contaminated subsurface indicate significant metabolic activity Environmental Microbiology
Adams Lawrence Berkeley National Laboratory Lui A Method for Circularizing Microbial Genomes from Metagenomics Data Environmental Microbiology
Adams Lawrence Berkeley National Laboratory Northen High throughput approaches for investigation of microbial interactions within synthetic microbial communities Environmental Microbiology
Adams University of Georgia Rubinstein Systems Biology-Based Optimization of Extremely Thermophilic Lignocellulose Conversion to Bioproducts Metabolic Engineering
Adams Lawrence Berkeley National Laboratory Smith Core Values: Spatial Variation in Microbial Function, Activity, and Community Assembly in Groundwater and Sediment from a Contaminated Subsurface Aquifer Environmental Microbiology
Adams Lawrence Berkeley National Laboratory Valenzuela A Multi-Laboratory Effort to Use Synthetic Communities to Discover, Characterize, and Dissect Key Microbial Processes Relevant to Field Observations Environmental Microbiology
Adams Oak Ridge National Laboratory Walker Spatiotemporal Dynamics of Groundwater and Sediment: Geochemistry, Microbial Communities and Activities in a Contaminated Aquifer Bioimaging
Adams University of Rhode Island Zhang Genome-scale metabolic and regulatory network reconstruction of Caldicellulosiruptor bescii Metabolic Engineering
Adams University of Rhode Island Zhang Integrating data and algorithms from the ENIGMA project into KBase Computational Biology
Alexander Brookhaven National Laboratory Alexander Optimal Experimental Design (OED) of Biological Systems Biosystems Design
Allen University of California, Berkeley Allen Identification of Transcription Factor Binding Sites and Characterization of Promoter Architecture in the model Diatom Phaeodactylum tricornutum Microbial Physiology
Allen University of California, Berkeley Smith Evolution and Metabolic Configuration of Nitrogen Flux in a Model Marine Diatom Microbial Physiology
Allen University of California, Berkeley Zheng Modeling carbon metabolism of the diatom Phaeodactylum tricornutum during nitrogen starvation and during high light and low light conditions Metabolic Engineering
Allen University of California, Berkeley Zuniga Temporal profiles unravel resource allocation mechanisms under nitrogen starvation in the diatom Phaeodactylum tricornutum Computational Biology
Allison University of California, Irvine Finks Prolonged drought alters plant-litter decomposition via changes in bacterial communities and substrate availability Plant-Microbe Interactions
Alonso University of North Texas Arias Natural Variation of Pennycress Metabolome and Transcriptome, an Emerging Crop for Aviation Biofuel Plant Feedstock
Alonso University of North Texas Ortiz Functional Analysis of Candidate Genes Involved in Oil Storage and Stability in Pennycress Plant Genomic Research
Amador-Noguez Oak Ridge National Laboratory Jacobson In vivo thermodynamic analysis of glycolysis in C. thermocellum and T. saccharolyticum using 13C and 2H tracers Microbial Physiology
Anderson University of Minnesota Frels Investigating Seed Size and Oil Content in Pennycress, Thlaspi arvense Plant Genomic Research
Arkin Lawrence Berkeley National Laboratory Allen KBase: The Systems Biology Knowledgebase for Predictive Biological and Environmental Research in an Integrated Data Platform Computational Biology
Arkin Lawrence Berkeley National Laboratory Chivian KBase: Microbiome and Phylogenomics Capabilities Computational Biology
Arkin Lawrence Berkeley National Laboratory Edirisinghe KBase : Omics driven discovery of novel functional capabilities in biological systems Computational Biology
Arkin Lawrence Berkeley National Laboratory Faria Large Scale Model-Driven comparison of Metagenome Assembled Genomes from Diverse Environments Environmental Microbiology
Arkin Pacific Northwest National Laboratory Kumar NWChem Computational Modeling of Metabolites in KBase Computational Biology
Arkin Lawrence Berkeley National Laboratory Weisenhorn KBase: Leveraging Amplicon Analysis Tools to Generate Testable Hypotheses From Complex Natural Communities Microbiome
Arkin Pacific Northwest National Laboratory Zucker The 2019 KBase Fungal Biochemistry Curation Jamboree: Insights and Lessons Learned Computational Biology
Avalos Princeton University Avalos Genetically Encoded Biosensors for Mitochondrial and Cytosolic Biosynthesis of Branched- Chain Higher Alcohols in Saccharomyces cerevisiae Microbial Physiology
Banfield Lawrence Berkeley National Laboratory Sachdeva Rapid automated curation of genomes from metagenomes and integration into KBase Microbiome
Bart University of Missouri Bart Optimizing Tradeoffs Implicit During Bioenergy Crop Improvement: Understanding the Effect of Altered Cell Wall and Sugar Content on Sorghum-associated Pathogenic Bacteria Plant-Microbe Interactions
Baxter Washington University in St. Louis Cousins PEPC kinetics and the efficiency of C4 photosynthesis in Sorghum bicolor Biosystems Design
Baxter Stanford University Dinneny Using synthetic genetic circuits to tightly control root architecture Biosystems Design
Baxter University of Rhode Island Kausch The Centrality of the Development of Transgenic Lines for the Analysis of Photosynthetic and Water Use Efficiencies in Sorghum Plant Genomic Research
Baxter University of Illinois at Urbana-Champaign Leakey Phenomics of stomata and water use efficiency in C4 species Biosystems Design
Baxter Carnegie Institution for Science Rhee New Computational Pipelines to Prioritize Candidate Genes for Optimal Biomass Production under Drought in C4 Plants Setaria viridis and Sorghum bicolor Computational Biology
Baxter University of Minnesota Voytas Targeted Mutagenesis and Programmed Transcriptional Regulation in Setaria and Sorghum Biosystems Design
Betenbaugh National Renewable Energy Laboratory Jenkins Optimizing Carbon Metabolism in Co-Culture for Applications to Sustainable Biosynthesis Metabolic Engineering
Betenbaugh Vanderbilt University Zuniga Metabolic Flux Analysis of Sucrose-Secreting Cyanobacterium Synechococcus elongatus Metabolic Engineering
Bhatnagar Boston University Bhatnagar Ectomycorrhizal fungi: mediators of plant-microbial interactions and terrestrial biogeochemistry Plant-Microbe Interactions
Blaby-Haas Brookhaven National Laboratory Blaby-Haas Developing a molecular-level model of cofactor-trafficking in chloroplasts Plant Feedstock
Blaby-Haas Brookhaven National Laboratory Xie Understanding poplar and sorghum micronutrient stress by integrating functional genomics with molecular-level experimentation Plant Feedstock
Blumwald Pacific Northwest National Laboratory Blumwald Molecular Regulation of Cell-type Specific Responses to Abiotic Stresses in Poplar Biosystems Design
Blumwald University of Tennessee Institute of Agriculture Stewart Rational design and testing of osmotic-stress inducible synthetic promoters from poplar cis-regulatory elements Biosystems Design
Bouskill Lawrence Berkeley National Laboratory Bouskill Microbial environmental feedbacks and the evolution of soil organic matter Environmental Microbiology
Boyle Colorado School of Mines Boyle Enabling Predictive Metabolic Modeling of Diurnal Growth Using a Multi-Scale Multi-Paradigm Approach Metabolic Engineering
Buckley Cornell University Barnett Harnessing Metagenomic Stable Isotope Probing to Uncover the Carbon Cycling Capacity of Soil Microbes Environmental Microbiology
Buckley Cornell University Wilhelm Phenolic acid-degrading populations of Paraburkholderia prime decomposition in forest soils Environmental Microbiology
Burley Rutgers University Westbrook RCSB Protein Data Bank: Making connections from genes to ecosystems Computational Biology
Burnum-Johnson Pacific Northwest National Laboratory Burnum-Johnson Spatiotemporal Mapping of Lignocellulose Decomposition by a Naturally Evolved Fungal Garden Microbial Consortium Environmental Microbiology
Busby Oregon State University Busby Identifying Plant Genes Associated With Pathogen Antagonism in Populus trichocarpa Microbiome
Cannon University of California, Berkeley Cannon Elucidating Principles of Bacterial-Fungal Interactions Environmental Microbiology
Cannon Pacific Northwest National Laboratory Cannon Learning Regulation And Optimal Control Of Enzime Activities And Application To Systems Biology Data Of Neurospora Crassa Computational Biology
Carlson Penn State University Carlson Breeding Resilient, Disease-Resistant Switchgrass Cultivars for Marginal Lands Plant Feedstock
Chain Penn State University Flynn Integrating read-based microbiome taxonomy classification tools into KBase Microbiome
Chain Los Alamos National Laboratory Kelliher Investigating Chloroplast Signal within the Hyphae of Diverse Fungi Environmental Microbiology
Chain Los Alamos National Laboratory Morales Resolving Intracellular Chloroplast in Fungi from Sequence to Slide Microbiome
Chain Los Alamos National Laboratory Robinson Examinations of the Fungal Genus Monosporascus Reveal its Potential as an Experimental Model for Studying Bacterial-Fungal Interactions Microbiome
Chapple Purdue University Chapple Coupling Metabolic Source Isotopic Pair Labeling And Genome Wide Association For Metabolite And Gene Annotation In Plants Plant Genomic Research
Church Harvard Medical School Filsinger Characterizing the portability of RecT-mediated oligonucleotide recombination Technology Development
Church Harvard Medical School Garruss Deep Mutational Learning of Protein Function for New Intracellular Biosensors Computational Biology
Church Harvard Medical School Nyerges Parallelized in vivo Construction of a Synthetic 57-Codon E. coli Genome Biosystems Design
Church Harvard Medical School Pawlowski Uncovering spatial taxonomic structures of synthetic microbial communities using subcellular RNA sequencing Technology Development
Church Harvard University Schubert High Throughput Functional Variant Screens via In-vivo Production of Single-stranded DNA Technology Development
Church Harvard University Stork Genetic Code Expansion in Bacillus subtilis Technology Development
Coates University of California, Berkeley Ewens Revealing the Prevalence and Diversity of a "Rare" Phosphorus Metabolism through Selective Enrichments and Genome Resolved Metagenomics Environmental Microbiology
Coates University of California, Berkeley Gomberg The Lineages of Dissimilatory Phosphite Oxidation Genes Indicate an Ancient, Vertically Transferred Metabolism Environmental Microbiology
Comai Pacific Southwest Research Station Comai Discovery and characterization of disease resistance loci using a unique gene copy number variant population Plant-Microbe Interactions
Coruzzi New York University Eshel EvoNet: A Phylogenomic and Systems Biology approach to identify genes underlying plant survival in marginal, low-Nitrogen soils Computational Biology
Cuevas University of Florida Cuevas Genome-wide association analysis of anthracnose resistance response in the NPGS sweet sorghum collection Plant Genomic Research
Dantas Washington University in St. Louis Anthony Elucidating aromatic tolerance and utilization in adaptively evolved Rhodococcus opacus strains for lignin valorization Lignin Valorization
Dantas Washington University in St. Louis Roell Characterizing growth and metabolism of Rhodococcus opacus PD630 on real lignin breakdown products Lignin Valorization
Davison University of Cincinnati Elkins Precision Labeling of Membrane Fatty Acids in Bacillus subtilis and the Impacts on the Cellular Proteome and Lipidome Microbial Physiology
Davison University of Tennessee O'Neill Pectin – lignin interactions in plant cell walls and model composites Deconstruction
Davison Oak Ridge National Laboratory Petridis Polymer and structural science behind valorizing lignin using solvents Lignin Valorization
DeAngelis University of Massachusetts DeAngelis Drivers and Mechanisms of Long-Term Soil Response to Chronic Warming Environmental Microbiology
DeLucia University of Illinois at Urbana-Champaign Burnham Assessing Biological Nitrification Inhibition in the Rhizosphere of Field-Grown Bioenergy Sorghum Plant-Microbe Interactions
DeLucia University of Florida Kannan Gene Targeting and Targeted Mutagenesis for Genetic Improvement of Oilcane Plant Feedstock
DeLucia University of Illinois at Urbana-Champaign Kent Linking Microbial Community Structure and Function for Sustainable Production of Bioenergy Crops Plant-Microbe Interactions
DeLucia University of Illinois at Urbana-Champaign Kim A role for differential RCA isoform expression in C4 bioenergy grass thermotolerance? Plant Feedstock
DeLucia Iowa State University Lee Development of High Throughput Primer Design and Quantification for Nitrogen Cycle Genes in Bioenergy Crop Soils Plant-Microbe Interactions
DeLucia University of Illinois at Urbana-Champaign Lee Rewiring Metabolism to Construct a Yeast Strain Capable of Producing 2,3-butanediol Without Ethanol and Glycerol Production Conversion
DeLucia University of Illinois at Urbana-Champaign Majeed Effectiveness of Payments for Greenhouse Gas Mitigation to Induce Low Carbon Bioenergy Production Sustainability
DeLucia University of Illinois at Urbana-Champaign Mishra Towards a fully automated algorithm driven platform for biosystems design Biosystems Design
DeLucia University of Illinois at Urbana-Champaign Moore An Ecosystem-Scale Comparison of Sorghum, Maize, and Miscanthus as Three Bioenergy Crop Candidates Biogeochemistry
DeLucia University of Illinois at Urbana-Champaign Nguyen Coarse-grained Modeling of Saccharomyces cerevisiae Physiology Conversion
DeLucia University of Nebraska Park Metabolic Engineering of Triacylglycerols with Specialized Fatty Acids in Sorghum Plant Feedstock
DeLucia West Virginia University Ridgeway Quantifying the Plant-Microbial Interactions Controlling Soil Organic Matter Formation in Bioenergy to Improve Model Representations of Sustainability Sustainability
DeLucia Brookhaven National Laboratory Shanklin Energizing the Machinery of Storage Lipid Synthesis in Plant Vegetative Tissues Plant Feedstock
DeLucia University of Illinois at Urbana-Champaign Varela Application of Spatially Adjusted Machine Learning Approaches to Improve Sorghum Biomass Prediction Using Unmanned Aerial Vehicles Plant Feedstock
DeLucia Lawrence Berkeley National Laboratory Yoshikuni Leveraging Comparative Population Genomics to Dissect the Mechanisms of Issatchenkia orientalis Fluconazole Resistance Biosystems Design
Dinneny Stanford University Dinneny Discovering Innovations in Stress Tolerance Through Comparative Gene Regulatory Network Analysis and Cell-Type Specific Expression Maps Plant Genomic Research
Doktycz Oak Ridge National Laboratory Cregger Plant-Microbe Interfaces: Temporal Variation in Plant-Microbe Interactions Environmental Microbiology
Doktycz Oak Ridge National Laboratory Demerdash Plant-Microbe Interfaces: Application of machine-learned protein-metabolite binding prediction models to plant-microbe interfaces Computational Biology
Doktycz Oak Ridge National Laboratory Doktycz Plant-Microbe Interfaces: Pathway prediction and production through cell-free synthetic biology Metabolic Engineering
Doktycz University of Tennessee Hettich Plant-Microbe Interfaces: Identification and characterization of Proteolytic Cleavage Product (PCP) peptides that function as key signaling molecules for Plant-Microbe Interactions Plant Genomic Research
Doktycz Oak Ridge National Laboratory Jacobson Plant-Microbe Interfaces: Systems biology approaches to understanding a plant's adaptation to and regulation of the phytobiome Computational Biology
Doktycz Oak Ridge National Laboratory Morrell-Falvey Plant-Microbe Interfaces: Identification of gene products involved in plant colonization by Pantoea sp. YR343 using a plant-responsive diguanylate cyclase Environmental Microbiology
Doktycz Oak Ridge National Laboratory Pelletier Plant-Microbe Interfaces: Simplified community approach to investigate the dynamic host-microbiome relationship Plant-Microbe Interactions
Doktycz Oak Ridge National Laboratory Tschaplinski Plant-Microbe Interfaces: Metabolomics of non-host switchgrass plants expressing a poplar lectin receptor-like kinase in response to the mycorrhizal fungus Laccaria bicolor Plant Genomic Research
Doktycz Oak Ridge National Laboratory Yang Plant-Microbe Interfaces: Experimental characterization of protein movement from plants to ectomycorrhizal fungus Plant Genomic Research
Donohue University of Wisconsin-Madison Askenasy Engineering of the Enzymes IspG and IspH from Zymononas mobilis to Increase Terpenoid Production Microbial Physiology
Donohue Michigan State University Bell-Dereske Stability of Switchgrass Leaf Microbiome in the Face of Natural Aerial Colonizers Plant-Microbe Interactions
Donohue Michigan State University Bibik Pathway Engineering and Re-targeting Boosts Production of High-Value Bioproducts in Plants Metabolic Engineering
Donohue University of Wisconsin-Madison Chew Designing Mixed-Solvent Environments for Acid-Catalyzed Biomass Conversion Processes Deconstruction
Donohue Michigan State University Cordova Associative nitrogen fixation (ANF) in high-yielding switchgrass varieties Plant-Microbe Interactions
Donohue University of Wisconsin-Madison Courtney Model-driven analysis of mutant fitness experiments improves genome-scale metabolic models of Zymomonas mobilis ZM4 Metabolic Engineering
Donohue University of Wisconsin-Madison Fortney Systems Level Comparison of Medium Chain Fatty Acid Production Microbial Physiology
Donohue University of Wisconsin-Madison Gupta Data-driven design and engineering of biomolecules: mRNA and DNA Computational Biology
Donohue Michigan State University Han MPK6-MYB46 Regulatory Module Suppresses Plant Biomass Formation During Salt Stress Plant Feedstock
Donohue University of Wisconsin-Madison Karlen Microbial conversion of chemically depolymerized lignin into valuable compounds Lignin Valorization
Donohue University of Wisconsin-Madison Kontur Microbial Valorization of Lignin: Using Novosphingobium aromaticivorans to Break the Bonds in Lignin and Convert Lignin Deconstruction Products into Value-added Chemicals Lignin Valorization
Donohue University of Wisconsin-Madison Krause Using Fungal Diversity to Improve Biofuel Conversion Metabolic Engineering
Donohue Texas A&M University Oliver Sorghum Dw2 controls stem growth by regulating PLDδ/endomembrane activity and cell proliferation Plant Genomic Research
Donohue University of Wisconsin-Madison O'Neill Integrated Spatially Explicit Optimization of Biofuel Supply Chains and Landscape Design Considering Biomass Supply Uncertainty Sustainability
Donohue University of Wisconsin-Madison Sato Crabtree-like aerobic xylose fermentation through increased metabolic flux and altered sugar signaling pathways in Saccharomyces cerevisiae Conversion
Donohue University of Wisconsin-Madison Smith Using the Zip-Lignin Strategy to Build the Optimal Sorghum Biofuel Crop Plant Feedstock
Donohue University of Wisconsin-Madison Tilhou Accelerating Yield Improvement in Switchgrass through Genomic Prediction of Floral Anthesis Plant Genomic Research
Donohue University of British Columbia Unda Incorporation of protocatechuaic acid (3, 4-dihydroxybenzoate) conjugates into the lignin of transgenic poplar Plant Genomic Research
Donohue University of Wisconsin-Madison Wadler Engineering Streptomyces to Capture Value from Lignocellulosic Biofuel Conversion Residue Metabolic Engineering
Dunbar Los Alamos National Laboratory Albright Organism interactions and substrate range are the primary mechanisms linked to divergent carbon flow during litter decomposition Environmental Microbiology
Dunbar Los Alamos National Laboratory Devan Role of geographic scale in likelihood of microbial-driven functional variation during litter decomposition Environmental Microbiology
Dunbar Los Alamos National Laboratory Hutchinson Merging fungal and bacterial community profiles via an internal control Environmental Microbiology
Dunbar Los Alamos National Laboratory Kroeger Microbial Community Composition Controls Carbon Flux Across Litter Types in Short-Term Litter Decomposition Environmental Microbiology
Dunbar Los Alamos National Laboratory Sevanto Influence of microbial surface litter decomposer communities on CO2 emissions from natural soils Environmental Microbiology
Dunlop Boston University Lin High-speed spectroscopic stimulated Raman scattering microscopy for measuring biofuel synthesis Biosystems Design
Dunlop Boston University Tague Single Cell Chemical Imaging with Stimulated Raman Scattering for Biofuel Production Screening Biosystems Design
Dyer US Arid-Land Agricultural Research Center Abdel-Haleem Genomics and Phenomics to Identify Yield and Drought Tolerance Alleles for Improvement of Camelina as a Biofuel Crop Plant Feedstock
Egbert Pacific Northwest National Laboratory Egbert Genome remodeling to control the persistence of engineered functions in soil microbes Biosystems Design
Eisenstein University of Maryland Eisenstein Transgenic Poplar Lines to Probe Host Genes Involved in Defense Against Rust Plant Feedstock
Evans Michigan State University Kittredge Relic DNA dynamics mask the resilience of switchgrass bacterial communities to extreme drying rewetting Microbiome
Evans Michigan State University Smercina Free-living Nitrogen Fixation in the Switchgrass Rhizosphere Plant-Microbe Interactions
Evans Michigan State University Ulbrich Soil Microbes Affect Switchgrass Germination More than Seedling Growth Under Drought Plant-Microbe Interactions
Eveland Donald Danforth Plant Science Center Eveland Elucidating the Molecular Mechanisms Underlying Drought Resilience in Sorghum Plant Feedstock
Fagnan Lawrence Berkeley National Laboratory Schulz Cultivation-independent expansion of the Nucleocytoplasmic Large DNA Viruses Environmental Microbiology
Fagnan Lawrence Berkeley National Laboratory Vangay The National Microbiome Data Collaborative: Empowering the Research Community to More Effectively Harness Microbiome Data Microbiome
Firestone Lawrence Berkeley National Laboratory Baker Unravelling Rhizosphere-Microbial Interactions in the Rhizosphere of Alamo Switchgrass (Panicum virgatum) under Abiotic Stresses Environmental Microbiology
Firestone Lawrence Berkeley National Laboratory Ceja-Navarro Multitrophic and Metabolite Responses to Drought in Grassland Soils Environmental Microbiology
Firestone University of California, Berkeley Emerson Cross-Kingdom Interactions: the Foundation for Nutrient Cycling in Grassland Soils Microbiome
Firestone Lawrence Berkeley National Laboratory Firestone Connecting switchgrass-microbe-soil interfaces for sustainable bioenergy crop production on marginal soils: stable-isotope labeling, genomics and exometabolomics Environmental Microbiology
Firestone Lawrence Berkeley National Laboratory Hao Spectroscopic Diagnosis of Plant Phosphorus Availability and Relationship to Tissue Chemistry and Productivity of a Bioenergy Feedstock Sustainability
Firestone University of California, Berkeley Kakouridis Arbuscular Mycorrhizal Fungi Transport Water to Host Plants Environmental Microbiology
Firestone University of Oklahoma Kuang Effects of Switchgrass Cultivation on Deep Soil Carbon Stock and Long-term Carbon Dynamics in Marginal Lands Sustainability
Firestone University of California, Berkeley Sieradzki Microbial and Viral Niche-Differentiation in Time-Resolved Metatranscriptomes from Rhizosphere and Detritusphere Soil Environmental Microbiology
Firestone Lawrence Berkeley National Laboratory Wang Succession of Rhizosphere Biotic Communities During Switchgrass Establishment in Marginal Soils Environmental Microbiology
Fox University of Wisconsin-Madison Fox Creation of an Acyltransferase Toolbox for Plant Biomass Engineering Plant Genomic Research
Gardner University of Maryland Gardner Using Systems Biology to Untangle the Complex Physiology of Bacterial Xylan Utilization Microbial Physiology
Gibert Duke University Gibert Protist Predation Mediates The Temperature Response Of Microbial Communities Environmental Microbiology
Gill Massachusetts Institute of Technology Bassalo A "Marionette" S. cerevisiae Strain to Control Metabolic Pathways Metabolic Engineering
Gill Lawrence Berkeley National Laboratory Freed Engineering of Regulatory Networks for Improved C3-C4 Alcohol Tolerance and Production in E. coli and S. cerevisiae Biosystems Design
Gill University of Colorado Gal-Oz Towards Integration of "Cello", the Computer-Aided Design Platform for Genetic Circuits, into KBase Biosystems Design
Gill University of Colorado Habib Design and engineering of native regulatory networks in non-model microbes Biosystems Design
Hofmockel Pacific Northwest National Laboratory Anderton Fungal hyphal networks play a key role in soil microbiome micronutrient acquisition and transport during drought Microbiome
Hofmockel Pacific Northwest National Laboratory Graham Viral diversity: decoding hidden potential for metabolic functions in soils Microbiome
Hofmockel Pacific Northwest National Laboratory Hofmockel Controls on the Composition of Microbial Derived Necromass in Soil Environmental Microbiology
Hofmockel Pacific Northwest National Laboratory Jansson Deconstructing the Soil Microbiome into Reduced-Complexity Functional Modules Microbiome
Hofmockel Pacific Northwest National Laboratory Lipton Unraveling the Molecular Mechanisms Underlying the Microbiome Response to Soil Rewetting Microbiome
Hofmockel Pacific Northwest National Laboratory McClure Generation and Analysis of Reduced Complexity Model Soil Consortia Microbiome
Hungate Northern Arizona University Hungate Effects of Warming on Bacterial Growth and Element Fluxes in Soil Microbiome
Hungate Northern Arizona University Schwartz Measurement of Isotope Assimilation Rates into Microbial DNA Through Quantitative Stable Isotope Probing with Internal Standards Environmental Microbiology
Jacobson Oak Ridge National Laboratory Garvin Peta- and Exa-scale for Arabidopsis in KBase Computational Biology
Jamann University of Illinois Jamann Conserved Genetic Mechanisms for Biotic Stress in Sorghum Plant Feedstock
Jardine Lawrence Berkeley National Laboratory Dewhirst Cell Wall O-Acetyl and Methyl Esterification Patterns of Leaves Reflected in Atmospheric Emission Signatures of Acetic Acid and Methanol Plant Genomic Research
Jewett LanzaTech Inc Brown Sequencing and Gene Mining the Largest Collection of Industrially used Acetone-Butanol-Ethanol (ABE) Fermentation Strains Biosystems Design
Jewett Oak Ridge National Laboratory Giannone Integrating Proteomic and Metabolomic Analyses to Optimize Cellular Extract Preparation for Enhanced Cell-Free Protein Synthesis Biosystems Design
Jewett LanzaTech Inc Jensen Establishing an Automated High-throughput Screening Platform Biosystems Design
Jewett LanzaTech Inc Koepke Accelerating Pathway Engineering of Non-Model Organisms Through Novel Cell-Free to In Vivo Workflows Biosystems Design
Jewett Northwestern University Martin Kinetic Modeling Tools Using Cell-Free Experiments to Predict Metabolic Network Behavior in Non-Model Systems Computational Biology
Jewett Northwestern University Ni Predicting Novel Biosynthetic Pathways with Generalized Enzymatic Reaction Rules Computational Biology
Jewett Northwestern University Rybnicky Determining Protospacer Adjacent Motif Preferences of Industrially Relevant Clostridial Type I-B CRISPR-Cas Systems Biosystems Design
Jonikas Princeton University Jonikas Transforming our understanding of chloroplast-associated genes through comprehensive characterization of protein localizations and protein-protein interactions Plant Genomic Research
Juenger University of Texas Edwards Host Genetics Control the Composition of Root-associated Microbiota in Switchgrass (Panicum virgatum) Environmental Microbiology
Juenger University of Texas MacQueen Genetics of Climate Adaptation Using Genome-Wide Association in Switchgrass Sustainability
Juenger Argonne National Laboratory Ricketts Ecosystem responses in switchgrass monoculture stands across a latitudinal gradient Sustainability
Juenger Lawrence Berkeley National Laboratory Singer Spatiotemporal dynamics of a microbiome on Panicum hallii under drought stress Plant-Microbe Interactions
Juenger University of Texas Lovell The Genomic Basis of Ecotype Evolution in Switchgrass Plant Genomic Research
Juenger University of Texas Zhang Using Machine Learning to Identify Cultivar x Site Interaction and Environmental Variable Affecting Aboveground Biomass Sustainability
Keasling Joint BioEnergy Institute Achinivu Distillable Ionic Liquids/Deep Eutectic Solvents for an Effective Recycling and Recovery Approach Deconstruction
Keasling Joint BioEnergy Institute Eudes Production of Platform Chemicals in Bioenergy Crops: Stacking Low-Recalcitrance Traits with Co-Products Plant Feedstock
Keasling Joint BioEnergy Institute Feist Adaptive Laboratory Evolution as an Efficient Technology for Strain Construction Technology Development
Keasling Joint BioEnergy Institute Garcia Martin ART: a machine learning Automated Recommendation Tool for synthetic biology Computational Biology
Keasling Joint BioEnergy Institute Gladden Conversion of Ionic Liquid Pretreated Poplar into Jet Fuel Metabolic Engineering
Keasling Joint BioEnergy Institute Ha High-Throughput Screening of Lignocellulosic Biomass Degrading Enzymes Utilizing Mass Spectrometry Technology Development
Keasling Joint BioEnergy Institute Hillson Collaboration with the Experiment Data Depot Biosystems Design
Keasling Joint BioEnergy Institute Iwai A Droplet Microfluidic Platform for Lab Automation Technology Development
Keasling Lawrence Berkeley National Laboratory Keasling Engineered Polyketide Synthases as Platform for Synthetic Chemistry Biosystems Design
Keasling Joint BioEnergy Institute Lee Redirecting metabolic flux via combinatorial multiplex CRISPRi-mediated repression for isopentenol production in E. coli Metabolic Engineering
Keasling Brookhaven National Laboratory Liu Lowering Lignin Recalcitrance and Producing Value Bioproducts in Poplar Metabolic Engineering
Keasling Lawrence Berkeley National Laboratory Mishra Environmental Impacts of Biomass Sorghum Production in the Continental United States Sustainability
Keasling Lawrence Berkeley National Laboratory Mortimer Sorghum Secondary Cell Wall Nanoarchitecture Can Be Revealed By Solid State NMR Plant Feedstock
Keasling Lawrence Berkeley National Laboratory Mukhopadhyay Genome-scale metabolic rewiring to achieve predictable titers, rates and yields of nonnative products at scale Metabolic Engineering
Keasling Lawrence Berkeley National Laboratory Petzold An Automated Sample Preparation Workflow For High-throughput, Quantitative Proteomic Studies of Microbes Technology Development
Keasling Lawrence Berkeley National Laboratory Scheller Field Testing of Engineered Switchgrass with Improved Biomass Yield and Sustainability Traits Plant Feedstock
Keasling Lawrence Berkeley National Laboratory Scown Machine Learning to Predict Biomass Sorghum Yields under Future Climate Scenarios Sustainability
Keasling Lawrence Berkeley National Laboratory Singer Catabolism of Lignin Oligomers by Soil-Derived Microbiomes Deconstruction
Keasling Lawrence Berkeley National Laboratory Singh Towards Whole Biomass Utilization: Development of Ionic Liquid Technologies for Lignin Deconstruction
Keasling Lawrence Berkeley National Laboratory Yang Carbon Footprint and Economics of Integrating Biogas Upgrading Process and Carbon Capture Technologies in Cellulosic Biorefineries Sustainability
Kirst University of Wisconsin-Madison Irving Evolution of root nodule symbiosis & engineering of symbiotic nitrogen fixation in Populus sp. Plant-Microbe Interactions
Kirst University of Florida Kates Global-Scale Phylogenomics of the Nitrogen-Fixing Clade Plant Genomic Research
Kirst University of Wisconsin-Madison Knaack Deciphering N-fixing symbiosis signaling in Medicago with dynamic regulatory module networks (DRMNs) Computational Biology
Lemaux University of California, Berkeley Lemaux Lessons from the Field: How Sorghum and Its Microbiome Respond to Drought Plant Feedstock
Lloyd University of Tennessee Lloyd Arctic Microbial Permafrost Degradation Biogeochemistry
Long University of Illinois at Urbana-Champaign Lee Increasing photosynthetic efficiency of energycane under fluctuating lights Biosystems Design
Long University of Florida Luo Towards Oil Cane: Engineering Energycane for Hyperaccumulation of Lipids and Improved Agronomic Performance Biosystems Design
Long University of Illinois at Urbana-Champaign Sobanska Toward transgenic sustainable productivity increases in Miscanthus giganteus Biosystems Design
Long University of Illinois at Urbana-Champaign Wang Stem Parenchyma Cell-specific Gene Characterization in Energycane Biosystems Design
Lowry Michigan State University Lowry Identification of Adaptive Fungal Pathogen Resistance Loci in Switchgrass Plant-Microbe Interactions
Lu University of Illinois at Urbana-Champaign Shin Simultaneous consumption of mixed sugars through the division of labor (DOL) in a synthetic Saccharomyces cerevisiae consortium Biosystems Design
Lu University of Illinois at Urbana-Champaign Xin Dissecting the Social Interactions of Yeast-Lactic Acid Bacteria Consortia Environmental Microbiology
Maeda Lawrence Berkeley National Laboratory Yoshikuni Constructing the Nitrogen Flux Maps (NFMs) of Plants Plant Genomic Research
Martienssen Cold Spring Harbor Laboratory Martienssen Biological Design of Lemnaceae Aquatic Plants for Biodiesel Production Biosystems Design
Marx University of Idaho Vasdekis Using Gene Editing and an Accumulated Bioproduct as a Reporter for Genotypic and Phenotypic Heterogeneity in Growth-vs-Production for Methylobacterium extorquens Conversion of Aromatics to Butanol Biosystems Design
Michener Oak Ridge National Laboratory Michener Systems Metabolic Engineering of Novosphingobium aromaticivorans for Lignin Valorization Biosystems Design
Mitchell Oak Ridge National Laboratory Sedova Structure to Function: Bringing Protein Structure and Ligand Screening to KBase Computational Biology
Moran Pacific Northwest National Laboratory Moran Evaluating Biogeochemical Processes Facilitated by Plant and Microbial Interactions within the Rhizosphere Plant-Microbe Interactions
Mouser University of New Hampshire Mouser Metabolic and membrane adaptations of the hydraulically fractured shale isolate Halanaerobium in response to temperature and growth rate fluctuations under continuous culture Biogeochemistry
Muchero Oak Ridge National Laboratory Muchero Genome sequencing reveal structural and nucleotide‐level divergence among immunosuppressing G-type Lectin Receptor kinases across multiple Salix species Plant-Microbe Interactions
Niyogi Brookhaven National Laboratory Blaby Genome-based Protein Function Discovery in the Eukaryotic Alga Chromochloris zofingiensisn Biosystems Design
Niyogi University of California, Berkeley Jeffers Elucidating Nutrient-Dependent Effects on Regulation of Photosynthesis and Metabolism Biosystems Design
Niyogi Colorado School of Mines Metcalf Genome-scale Metabolic Model of Chromochloris zofingiensis, an Emerging Model Green Alga for Sustainable Fuel Production Metabolic Engineering
Noirot Argonne National Laboratory Noirot Machine Learning Guided Design of Safeguards That Operate Under Various Bacterial Physiologies Technology Development
Northen Lawrence Berkeley National Laboratory Chiniquy Fabricated Ecosystems (EcoFABs) design for controlled and reproducible habitats to investigate plant-microbe-soil interactions Technology Development
Northen North Carolina State University Nethery m-CAFEs Applications of Targeted Editing in Microbial Networks Technology Development
Northen University of California, Berkeley Rubin Targeted DNA Editing Within Microbial Communities Technology Development
Northen Lawrence Berkeley National Laboratory Zhalnina Designing Synthetic communities for dissecting plant-microbe interactions in fabricated ecosystems (EcoFABs) Technology Development
Orphan University of Georgia He Microbial Interactions at Micro-scale and Pore-scale Revealed by Process-based Reactive Transport Modeling Environmental Microbiology
Orphan California Institute of Technology Orphan Methane and nutrient cycling by sediment-hosted archaeal-bacterial syntrophic consortia and their viral predators Environmental Microbiology
Pakrasi Washington University in St. Louis Banerjee Systems analysis of a fast growing N2-fixing cyanobacterium for production of advanced biofuels and nitrogen-containing petrochemical replacement compounds Microbial Physiology
Papoutsakis University of Delaware Charubin Syntrophic co-cultures of Clostridium organisms to produce higher alcohols and other C6-C8 metabolites Metabolic Engineering
Papoutsakis Pennsylvania State University Foster Modeling growth kinetics and metabolism of Clostridium acetobutylicum/Clostridium ljungdahlii co-culture with cell fusion Computational Biology
Peay Stanford University Peay Symbiotic niche mapping reveals nutrient specialization and functional complementarity among ectomycorrhizal fungi Plant-Microbe Interactions
Pett-Ridge Northern Arizona University Foley Using Quantitative Stable Isotope Probing to Link Precipitation Regimes of Mediterranean-Grassland Ecosystems to Soil Microbial Ecophysiology Environmental Microbiology
Pett-Ridge Lawrence Berkeley National Laboratory Marschmann Trait-based Modeling of Mineral-associated Soil Organic Matter Formation in Distinct Soil Habitats Environmental Microbiology
Pett-Ridge Lawrence Berkeley National Laboratory Pett-Ridge Unearthing the Active Microbes, Viruses and Metabolites in Dynamic-Redox Tropical Soils with Quantitative SIP and Metagenomics Environmental Microbiology
Pett-Ridge Lawrence Berkeley National Laboratory Sokol How Drought Modulates Formation and Persistence of Microbial-Derived Soil Carbon from Rhizosphere, Detritusphere, and Bulk Soil Microbial Communities Environmental Microbiology
Pett-Ridge The Ohio State University Sun Viral Diversity and Potential Carbon Cycling Impacts Across a Soil Climate Gradient Environmental Microbiology
Pett-Ridge The Ohio State University Zablocki A Workflow for Generating and Polishing Nanopore Reads from Low Biomass Samples Environmental Microbiology
Rhee Carnegie Institution for Science Rhee High-Throughput Determination of a Subcellular Metabolic Network Map of Plants Metabolic Engineering
Salis Penn State University Liew Multiplex Genome Engineering for Bioproduction of 3-Hydroxypropionic Acid and 1,3- Propanediol from Waste Gases Metabolic Engineering
Salis Penn State University Salis A Thousand Highly Non-Repetitive Promoters for Controlling Transcription Rates in Clostridia during Syngas Fermentation Metabolic Engineering
Salvachua National Renewable Energy Laboratory Salvachua White-Rot Fungi Utilize Lignin-Derived Compounds as a Carbon Source Lignin Valorization
Schachtman Washington University in St. Louis Cousins Leaf Carbon Isotope Composition in Diverse Sorghum Lines Plant Feedstock
Schachtman University of Nebraska Ozersky Data access, mining and visualization. Tools to accommodate an interdisciplinary project. Sustainability
Schachtman University of Nebraska Schachtman Approaches to the Development of Sustainable Energy Sorghum Biofuel Feedstocks in Drought Prone and Low Nitrogen Environments Plant Feedstock
Schachtman University of Nebraska Tringe Sorghum root microbiome dynamics under nutrient-limited and drought conditions Plant-Microbe Interactions
Schilling University of Minnesota Anderson Gene Regulatory Networks Enabling Fungi to Selectively Extract Sugars from Lignocellulose Deconstruction
Schnell Michigan State University Schnell A Systems Approach to Enhancing Seedling Establishment for Increased Yields in the Oilseed Crop, Camelina sativa Biosystems Design
Sedbrook Illinois State University Sedbrook Advancing Field Pennycress as a New Oilseed Biofuels Feedstock that Does Not Require New Land Commitments Plant Feedstock
Semray University of Michigan Kang-Yun Competition Between Methanotrophs for Copper Environmental Microbiology
Solomon Purdue University Hillman Genetic tools to optimize lignocellulose conversion in anaerobic fungi and interrogate their genomes Biosystems Design
Stuart Lawrence Livermore National Laboratory Brisson Characterizing algal metabolites and their role in biotic interactions Environmental Microbiology
Stuart Lawrence Livermore National Laboratory Dhaeseleer Tools for Importing, Comparing and Merging Functional Annotations for Improved Metabolic Modeling in KBase Computational Biology
Stuart Lawrence Livermore National Laboratory Hestrin Beneficial Partners: Mycorrhizal Resource Exchange in Bioenergy Cropping Systems Plant-Microbe Interactions
Stuart Lawrence Livermore National Laboratory Kim Examining the role of physical proximity and diffusion of metabolites in algal-bacterial interactions Environmental Microbiology
Stuart Lawrence Livermore National Laboratory Lee Understanding Variation in the Switchgrass Microbiome Across Scales: Evidence for Both Host Filtering and Environmental Control Plant-Microbe Interactions
Stuart Lawrence Livermore National Laboratory Mayali Categorizing metabolic exchange and signaling reveal distinct mechanisms of mutualistic algal-bacterial interactions Environmental Microbiology
Stuart Lawrence Livermore National Laboratory Navid System-level analyses of beneficial interactions in an algal-bacterial co-culture Computational Biology
Sullivan The Ohio State University Solden Viruses may manipulate the global carbon cycle through carbohydrate active enzymes Environmental Microbiology
Sullivan The Ohio State University Sullivan KBase Science GSP: Towards a Viral Ecogenomics Toolkit at KBase Environmental Microbiology
Sullivan The Ohio State University Sullivan The role of viruses in the carbon cycle along a permafrost thaw gradient Environmental Microbiology
Tabita The Ohio State University Cannon Novel Microbial Routes to Synthesize Industrially Significant Precursor Compounds Metabolic Engineering
Tabita The Ohio State University North Novel nitrogenase-like C-S lyases link bacterial anaerobic methionine salvage to ethylene and methane production Microbial Physiology
Taga University of California, Berkeley Hallberg Corrinoids as model nutrients to probe microbial interactions in a soil ecosystem Environmental Microbiology
Tas Lawrence Berkeley National Laboratory Tas Microbial controls on biogeochemical cycles in permafrost ecosystems Microbiome
Taylor University of California, Davis Taylor Understanding the genetic basis of drought tolerance in bioenergy poplar Plant Feedstock
Trinh University of Tennessee Trinh Understanding and Harnessing the Exceptional Robustness of Yarrowia lipolytica for the Conversion of Biomass Hydrolysate into Designer Bioesters Metabolic Engineering
Trinh University of Tennessee Walker Understanding and Eliminating the Detrimental Effect of Thiamine Deficiency on the Oleaginous Yeast Yarrowia lipolytica Metabolic Engineering
Tullman-Ercek Northwestern University Ikonomova Employing Bacterial Microcompartments To Create Privileged Redox Pools for Biofuel Production Metabolic Engineering
Tuskan Oak Ridge National Laboratory Barros Genetic engineering to produce C-lignin deposition in plant stems Plant Feedstock
Tuskan Oak Ridge National Laboratory Chaves Genome shuffling and bacterial quantitative trail locus (QTL) mapping in Pseudomonas putida Technology Development
Tuskan University of Colorado Eckert Engineering CRISPR-Cas Systems for Genome Editing in Pseudomonas putida KT2440 and Clostridium thermocellum Metabolic Engineering
Tuskan Oak Ridge National Laboratory Galanie High-throughput functional characterization of Populus trichocarpa UDP-glycosyltransferases Plant Genomic Research
Tuskan Oak Ridge National Laboratory Holwerda Lignocellulose-Fermenting Microbiomes: A "Compass" for Biofuel Process Development Conversion
Tuskan University of Georgia Illa-Berenguer Building a suite of CRISPR/Cas9 tools for efficient switchgrass gene editing Plant Genomic Research
Tuskan Oak Ridge National Laboratory Kainer Rapid domestication of poplar using genomic selection and machine learning Computational Biology
Tuskan Oak Ridge National Laboratory Labbe The role of beneficial microbes in stress management of Populus Sustainability
Tuskan Oak Ridge National Laboratory Li Catalytic Upgrading of n-Butanol to Fully Synthetic Jet Fuel Conversion
Tuskan Oak Ridge National Laboratory Lynd Improving Clostridium thermocellum Product Titers by Increasing the Thermodynamic Driving Force of its Glycolytic Pathway Conversion
Tuskan Oak Ridge National Laboratory Pendergast QTL mapping and candidate gene discovery of metabolomic signatures in switchgrass Plant Feedstock
Tuskan Oak Ridge National Laboratory Prates AkiraProt: An Ensemble Workflow for Proteome-Wide Structural Analysis Computational Biology
Tuskan Oak Ridge National Laboratory Sarkar SNPeffect: Identifying Functional Roles for SNPs using Metabolic Networks Computational Biology
Tuskan Oak Ridge National Laboratory Smith Enzymatic Synthesis of Xylan Microstructures Conversion
Tuskan Massachusetts Institute of Technology Stone High-throughput Reductive Catalytic Fractionation for Lignin Characterization in the Genome Wide Association Study of Poplar Technology Development
Tuskan Oak Ridge National Laboratory Wang Characterization of drought tolerance and water-use efficiency related traits in switchgrass Sustainability
Tuskan National Renewable Energy Laboratory Webb Economic Impact of Yield and Composition Variation in Bioenergy Crops: Populus trichocarpa Plant Feedstock
Tuskan Oak Ridge National Laboratory Werner Investigating the spatial organization of aromatic catabolism in P. putida KT2440 Lignin Valorization
Tuskan Oak Ridge National Laboratory Xie Functional genomic and cross-species studies uncover novel regulators of phenylpropanoid biosynthesis Plant Genomic Research
Tuskan National Renewable Energy Laboratory Yarbrough Leveraging Super High Optical Resolution Microscopy to Probe the Interaction Zone Between Clostridium thermocellum and Biomass Conversion
Tyo Northwestern University Biggs Prospecting thiamine diphosphate-dependent carboligases and characterizing their promiscuity to create novel metabolic pathways from primary metabolites Metabolic Engineering
Tyo Northwestern University Dinh Using machine learning to model promiscuous activity of thiamine diphosphate-dependent carboligases and side reactions in the E. coli metabolome Computational Biology
Umen University of Missouri Umen Deep Green: Structural and Functional Genomic Characterization of Conserved Unannotated Green Lineage Proteins Plant Genomic Research
Varala Purdue University Varala Infernet: Gene Function Inference By Leveraging Large, Organ-Specific Expression Datasets And Validation Of Non-Redundant Regulators Plant Genomic Research
Wang Auburn University Badr Dynamic Genome-Scale Metabolic Network Modeling for a Novel Methanotroph-Cyanobacteria Coculture Conversion
Wang San Diego State University Bray Tuning C1-metabolism for efficient utilization of biogas in synthetic photoautotroph-methanotroph binary consortium Conversion
Weston Oak Ridge National Laboratory Weston Microbiome transfer and synthetic community approaches for determining the genetic and environmental factors underlying mutualism within a Sphagnum peatmoss system Plant-Microbe Interactions
Westpheling Oak Ridge National Laboratory Westpheling Development of emerging model microorganisms: Megasphaera elsdenii for biomass and organic acid upgrading to fuels and chemicals Metabolic Engineering
Wheeldon University of California, Berkeley Wheeldon Developing the yeast Kluyveromyces marxianus as a thermotolerant bioproduction host Metabolic Engineering
Whitman University of Wisconsin-Madison Whitman Dissection of Carbon and Nitrogen Cycling in Post-Fire Soil Environments using a Genome-Informed Experimental Community Environmental Microbiology
Winkler University of Washington Winkler Integrating single-cell wetland microbiome structure, function, and activity to ecosystemscale biogeochemical fluxes Environmental Microbiology
Wrighton Argonne National Laboratory Versteeg Coupling KBASE with PFLOTRAN Technology Development
Yeates UCLA-DOE Institute for Genomics and Proteomics Loo Microbial Metabolism, Chemistry, and Communities under Study at the UCLA-DOE Institute for Genomics and Proteomics Environmental Microbiology
Yeates UCLA-DOE Institute for Genomics and Proteomics Pellegrini Transcriptomic analyses of bulk and single cell Chalmydomonas RNA-seq data reveal new gene functions and cell state heterogeneity Plant Genomic Research
Yeates UCLA-DOE Institute for Genomics and Proteomics Rodriguez New Atomic Imaging Technology Development at the UCLA-DOE Institute Computational Biology
Yeates UCLA-DOE Institute for Genomics and Proteomics Sherkanov Innovations in Enzyme and Pathway Engineering for Cell-Free Production of Biofuels and High-Value Chemicals Biosystems Design
Young Vanderbilt University Babele Rapid flux phenotyping to accelerate metabolic engineering of cyanobacteria Metabolic Engineering
Young Vanderbilt University Wang Metabolic engineering of cyanobacteria for enhanced production of ethylene and free fatty acids Metabolic Engineering
Zerbe University of California, Berkeley Tiedge Improved Biofuel Production through Discovery and Engineering of Terpene Metabolism in Switchgrass Plant Genomic Research
Zhao The Pennsylvania State University Dinh Genome-scale Model Reconstruction and 13C-Metabolic Flux Analysis for Non-model Yeast Organisms Rhodosporidium toruloides IFO0880 and Issatchenkia orientalis SD108 Metabolic Engineering
Zhao University of Illinois at Urbana-Champaign Schultz Exploring Oleaginous Yeast Rhodosporidium toruloides as a Platform Organism for Production of Chemicals and Fuels Metabolic Engineering
Zhao Princeton University Xiao Evidence for Metabolic Channeling of Glucose into the Oxidative Pentose Phosphate Pathway to Drive NADPH Production in Rhodosporidium toruloides Metabolic Engineering