Genomic Science Program. Click to return to home page.

Genomic Science Program

Systems Biology for Energy and the Environment

Department of Energy Office of Science. Click to visit main DOE SC site.

Genomic Science Program

All Awardee Workshops

Genomics:GTL Awardee Workshop VI
Metabolic Engineering Working Group
Interagency Conference on Metabolic Engineering 2008

Bethesda, Maryland February 10–13, 2008

Awardee Workshop Downloads

Presentations see below

Book PDFs:
faster download or higher resolution.

By Section:

  • Systems Biology
    • Bioenergy [PDF]
    • Systems Environmental Microbiology [PDF]
  • Strategy and Technology Development [PDF]
  • Communication and ELSI [PDF]
  • Welcome and Introduction [PDF]
  • Websites [PDF]
  • Indexes [PDF]
  • Abstract Addendum [PDF]
  • Agenda [PDF]

Presentation on Strategic Plan by Sharlene Weatherwax, U.S. Department of Energy

Genomics:GTL Goal and Objectives

Ultimate Scientific Goal
Achieve a predictive, systems-level understanding of plants, microbes, and biological communities, via integration
of fundamental science and technology development, to enable biological solutions to DOE mission challenges,
including energy, environment, and climate.

Objective 1: Determine the genomic properties, molecular and regulatory mechanisms, and resulting functional potential of microbes, plants, and biological communities central to DOE missions.

Objective 2: Develop the experimental capabilities and enabling technologies needed to achieve a genome-based, dynamic systems-level understanding of organism and community functions.

Objective 3: Develop the knowledgebase, computational infrastructure, and modeling capabilities to advance the understanding, prediction, and manipulation of complex biological systems.

Abstract Organization

Abstracts associated with the Metabolic Engineering Working Group (MEWG) are identified as such and are intermixed with GTL abstracts in relevant categories. The Genomics:GTL and MEWG program abstracts and posters are organized according to the following research areas important to achieving the ultimate GTL scientific goal and objectives.

Book PDFs: faster download PDF, 3308 kb; higher resolution PDF, 5142 kb.

Systems Biology for DOE Energy and Environmental Missions

Bioenergy (PDF, 849 kb)

  • Biofuels: Bioenergy Research Centers
  • Biofuels: Analytical and Imaging Technologies for Studying Lignocellulosic Material Degradation
  • Biofuels: Metabolic Engineering for Biofuels Production
  • BioHydrogen: Quantitative Microbial Biochemistry and Metabolic Engineering for Biological Hydrogen Production

Systems Environmental Microbiology (PDF, 2823 kb)

Systems Biology Research Strategy and Technology Development (PDF, 1953 kb)

  • Genomic and Proteomic Strategies
  • Molecular Interactions and Protein Complexes
  • Validation of Genome Sequence Annotation
  • Computing Resources and Databases

Communication and Ethical, Legal, and Societal Issues (PDF, 205 kb)

Abstract Addendum (PDF, 319 kb)
Abstracts in the addendum are not included in indexes below.

Table of Contents, Welcome, and Introduction (PDF, 769 kb)

Web Sites (PDF, 71 kb)

Indexes (PDF, 754 kb)
Does not include Abstract Addendum (PDF, 319 kb)

Agenda (PDF, 147 kb)


  • Presentation on Strategic Plan, Sharlene Weatherwax
  • CAMERA: A Metagenomics Resource for Microbial Ecology, Saul A. Kravitz and Rekha Seshadri, J. Craig Venter Institute (PDF, 6451 kb)
  • New Funding Announcement: DE-FOA-0002214 - Systems Biology Research To Advance Sustainable Bioenergy Crop Development
    Additional Information » [01/20]
  • New Funding Announcement: DE-FOA-0002215 - ESPCoR FOA 2215 Building EPSCOR-State/National Laboratory Partnerships
    Additional Information » [12/19]
  • New Funding Announcement: DE-FOA-0002217 – Computational Tool Development for Integrative Systems Biology Data Analysis Additional Information » [11/19]
  • New Funding Announcement: DE-FOA-0002173 – Early Career Research Program Additional Information » [11/19]
  • Now Available: Breaking the Bottleneck of Genomes: Understanding Gene Function Across Taxa report [9/19]
  • 2019 PI Meeting: Genomic Sciences Program Annual Principal Investigator Meeting February 24 - 27, 2019. Abstracts and More »
  • DOE Announces $64 Million for Plant and Microbe Research: U.S. Department of Energy announced $64 million in funding for 25 university-led genomics research projects on plants and microbes for bioenergy and bioproducts. [8/19]
    Read More »
  • $13.5 Million for New Bioimaging Approaches for Bioenergy: The U.S. Department of Energy announced $13.5 million in funding for six projects to develop new approaches to microscopic imaging of plants and microbes. [8/19]
    Read More »
  • More News and Announcements »

Publication Highlights

  • Publication Highlights »
  • Search Highlights »